Evidence map›Paper›PMID 29785964›Full record

ArticleGenes & development2018

Mechanism of selective recruitment of RNA polymerases II and III to snRNA gene promoters.

Oleksandr Dergai, Pascal Cousin, Jerome Gouge, Karishma Satia, Viviane Praz, Tracy Kuhlman, Philippe Lhôte, Alessandro Vannini, Nouria Hernandez

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
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  6. Molecular basis of neurodegeneration in a mouse model ofbioRxiv : the preprint server for biology · 2024
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  19. Multiple direct interactions of TBP with the MYC oncoprotein.Nature structural & molecular biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Oleksandr DergaiCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.
Pascal CousinCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.
Jerome GougeDivision of Structural Biology, The Institute of Cancer Research, London SW7 3RP, United Kingdom.ORCID 0000-0003-4734-5412
Karishma SatiaDivision of Structural Biology, The Institute of Cancer Research, London SW7 3RP, United Kingdom.
Viviane PrazCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.
Tracy KuhlmanCold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.
Philippe LhôteCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.
Alessandro VanniniDivision of Structural Biology, The Institute of Cancer Research, London SW7 3RP, United Kingdom.ORCID 0000-0001-7212-5425
Nouria HernandezCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.ORCID 0000-0003-1465-4585
University of Lausanne · CHInstitute of Cancer Research · GBCold Spring Harbor Laboratory · USSIB Swiss Institute of Bioinformatics · CH

Funding

Cancer Research UK 21536Wellcome Trust 200818/Z/16/Z
6 · The paper itself

Abstract

RNA polymerase II (Pol II) small nuclear RNA (snRNA) promoters and type 3 Pol III promoters have highly similar structures; both contain an interchangeable enhancer and "proximal sequence element" (PSE), which recruits the SNAP complex (SNAPc). The main distinguishing feature is the presence, in the type 3 promoters only, of a TATA box, which determines Pol III specificity. To understand the mechanism by which the absence or presence of a TATA box results in specific Pol recruitment, we examined how SNAPc and general transcription factors required for Pol II or Pol III transcription of SNAPc-dependent genes (i.e., TATA-box-binding protein [TBP], TFIIB, and TFIIA for Pol II transcription and TBP and BRF2 for Pol III transcription) assemble to ensure specific Pol recruitment. TFIIB and BRF2 could each, in a mutually exclusive fashion, be recruited to SNAPc. In contrast, TBP-TFIIB and TBP-BRF2 complexes were not recruited unless a TATA box was present, which allowed selective and efficient recruitment of the TBP-BRF2 complex. Thus, TBP both prevented BRF2 recruitment to Pol II promoters and enhanced BRF2 recruitment to Pol III promoters. On Pol II promoters, TBP recruitment was separate from TFIIB recruitment and enhanced by TFIIA. Our results provide a model for specific Pol recruitment at SNAPc-dependent promoters.

Indexed as

Promoter Regions, GeneticHEK293 CellsHumansMutationProtein BindingProtein DomainsProtein TransportRNA Polymerase IIRNA Polymerase IIIRNA, Small NuclearTATA BoxTATA-Box Binding ProteinTranscription FactorsTranscription Factor TFIIBRNA Polymerase IIRNA Polymerase IIIRNA, Small NuclearSNAPC protein complex, humanTATA-Box Binding ProteinTranscription FactorsTranscription Factor TFIIBBRF2small nuclear RNA promotersSNAPcTBPTFIIATFIIB

Identifiers

PMID29785964
PMCPMC6004067
OpenAlexW2804274871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.