Evidence map›Paper›PMID 29784978›Full record

ArticleNature microbiology2018

Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria.

Thomas D Otto, Aude Gilabert, Thomas Crellen, Ulrike Böhme, Céline Arnathau, Mandy Sanders, Samuel O Oyola, Alain Prince Okouga, Larson Boundenga, Eric Willaume and 10 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 108 papers.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed
23.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed, 196 citations in OpenAlex.

  1. Article
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  6. Towards an evolutionary baseline model ofbioRxiv : the preprint server for biology · 2025
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  10. Laboratory Evaluation of Synthetic Attractants forJournal of arthropod-borne diseases · 2025
    Article
  11. Review
  12. Diamonds in the rif: Alignment-free comparative genomics analysis reveals strain-transcendent Plasmodium falciparum antigens amidst extensive genetic diversity.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2025
    Article
  13. Variable surface antigen expression, virulence, and persistent infection byMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Comparative immunological roles of TEP1 inFrontiers in immunology · 2025
    Review
  20. Article

48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 5 countries.

Thomas D Otto *Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, UK. thomasdan.otto@glasgow.ac.uk.ORCID http://orcid.org/0000-0002-1246-7404
Aude Gilabert *Laboratoire MIVEGEC, UMR 5290-224 CNRS 5290-IRD224-UM, Montpellier, France.ORCID http://orcid.org/0000-0003-0764-9171
Thomas CrellenWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Ulrike BöhmeWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Céline ArnathauLaboratoire MIVEGEC, UMR 5290-224 CNRS 5290-IRD224-UM, Montpellier, France.
Mandy SandersWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Samuel O OyolaWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Alain Prince OkougaCentre International de Recherches Médicales de Franceville, Franceville, Gabon.
Larson BoundengaCentre International de Recherches Médicales de Franceville, Franceville, Gabon.
Eric WillaumeSodepal, Parc of la Lékédi, Bakoumba, Gabon.
Barthélémy NgoubangoyeCentre International de Recherches Médicales de Franceville, Franceville, Gabon.
Nancy Diamella MoukodoumCentre International de Recherches Médicales de Franceville, Franceville, Gabon.
Christophe PaupyLaboratoire MIVEGEC, UMR 5290-224 CNRS 5290-IRD224-UM, Montpellier, France.ORCID http://orcid.org/0000-0002-7122-2079
Patrick DurandLaboratoire MIVEGEC, UMR 5290-224 CNRS 5290-IRD224-UM, Montpellier, France.
Virginie RougeronLaboratoire MIVEGEC, UMR 5290-224 CNRS 5290-IRD224-UM, Montpellier, France.
Benjamin OllomoCentre International de Recherches Médicales de Franceville, Franceville, Gabon.
François RenaudLaboratoire MIVEGEC, UMR 5290-224 CNRS 5290-IRD224-UM, Montpellier, France.
Chris NewboldWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Matthew BerrimanWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0002-9581-0377
Franck PrugnolleLaboratoire MIVEGEC, UMR 5290-224 CNRS 5290-IRD224-UM, Montpellier, France.ORCID http://orcid.org/0000-0001-8519-1253
Centre National de la Recherche Scientifique · FRWellcome Sanger Institute · GBCentre International de Recherches Médicales de Franceville · GASociété de Développement des Forêts · CI

Funding

Wellcome Trust 098051Wellcome Trust 104792Wellcome Trust 206194
6 · The paper itself

Abstract

Plasmodium falciparum, the most virulent agent of human malaria, shares a recent common ancestor with the gorilla parasite Plasmodium praefalciparum. Little is known about the other gorilla- and chimpanzee-infecting species in the same (Laverania) subgenus as P. falciparum, but none of them are capable of establishing repeated infection and transmission in humans. To elucidate underlying mechanisms and the evolutionary history of this subgenus, we have generated multiple genomes from all known Laverania species. The completeness of our dataset allows us to conclude that interspecific gene transfers, as well as convergent evolution, were important in the evolution of these species. Striking copy number and structural variations were observed within gene families and one, stevor, shows a host-specific sequence pattern. The complete genome sequence of the closest ancestor of P. falciparum enables us to estimate the timing of the beginning of speciation to be 40,000-60,000 years ago followed by a population bottleneck around 4,000-6,000 years ago. Our data allow us also to search in detail for the features of P. falciparum that made it the only member of the Laverania able to infect and spread in humans.

Indexed as

Genome, ProtozoanAnimalsEvolution, MolecularGenetic SpeciationGene Transfer, HorizontalHost SpecificityHumansMalariaMultigene FamilyPhylogenyPlasmodiumPlasmodium falciparumSequence Analysis, DNAVirulence

Identifiers

PMID29784978
PMCPMC5985962
OpenAlexW2805374512

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.