Evidence map›Paper›PMID 29784881›Full record

ArticleThe Journal of biological chemistry2018

Structural basis for ADP-dependent glucokinase inhibition by 8-bromo-substituted adenosine nucleotide.

Przemysław Grudnik, Marcin M Kamiński, Krzysztof P Rembacz, Katarzyna Kuśka, Mariusz Madej, Jan Potempa, Maciej Dawidowski, Grzegorz Dubin

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Structural Characterization of Glycerol Kinase from the Thermophilic FungusInternational journal of molecular sciences · 2020
    Article
  7. Crystal Structure ofInternational journal of molecular sciences · 2019
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Przemysław GrudnikFrom the Faculty of Biochemistry, Biophysics and Biotechnology and przemyslaw.grudnik@uj.edu.pl.ORCID 0000-0002-7157-0014
Marcin M Kamińskithe Department of Immunology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, and marcin.kaminski@stjude.org.
Krzysztof P RembaczFrom the Faculty of Biochemistry, Biophysics and Biotechnology and.
Katarzyna KuśkaFrom the Faculty of Biochemistry, Biophysics and Biotechnology and.
Mariusz MadejFrom the Faculty of Biochemistry, Biophysics and Biotechnology and.
Jan PotempaFrom the Faculty of Biochemistry, Biophysics and Biotechnology and.
Maciej Dawidowskithe Faculty of Pharmacy, Warsaw Medical University, Banacha 1 Street, 02-097 Warsaw, Poland.
Grzegorz DubinFrom the Faculty of Biochemistry, Biophysics and Biotechnology and grzegorz.dubin@uj.edu.pl.ORCID 0000-0002-5535-5760
Jagiellonian University · PLUniversity of Agriculture in Krakow · PLMedical University of Warsaw · PLSt. Jude Children's Research Hospital · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In higher eukaryotes, several ATP-utilizing enzymes known as hexokinases activate glucose in the glycolysis pathway by phosphorylation to glucose 6-phosphate. In contrast to canonical hexokinases, which use ATP, ADP-dependent glucokinase (ADPGK) catalyzes noncanonical phosphorylation of glucose to glucose 6-phosphate using ADP as a phosphate donor. Initially discovered in Archaea, the human homolog of ADPGK was described only recently. ADPGK's involvement in modified bioenergetics of activated T cells has been postulated, and elevated ADPGK expression has been reported in various cancer tissues. However, the physiological role of ADPGK is still poorly understood, and effective ADPGK inhibitors still await discovery. Here, we show that 8-bromo-substituted adenosine nucleotide inhibits human ADPGK. By solving the crystal structure of archaeal ADPGK in complex with 8-bromoadenosine phosphate (8-Br-AMP) at 1.81 Å resolution, we identified the mechanism of inhibition. We observed that 8-Br-AMP is a competitive inhibitor of ADPGK and that the bromine substitution induces marked structural changes within the protein's active site by engaging crucial catalytic residues. The results obtained using the Jurkat model of activated human T cells suggest its moderate activity in a cellular setting. We propose that our structural insights provide a critical basis for rational development of novel ADPGK inhibitors.

Indexed as

AdenosineCatalytic DomainCrystallography, X-RayGlucokinaseGlucoseHumansJurkat CellsProtein Conformation8-bromoadenosineAdenosineADP-dependent glucokinaseGlucokinaseGlucose8-bromo-adenosine monophosphate8-bromo-AMPADP-dependent glucokinasecrystal structureenzyme inhibitorglucose metabolismglycolysisreactive oxygen speciesT cell activationX-ray crystallography

Identifiers

PMID29784881
PMCPMC6052215
OpenAlexW2804014350

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.