Evidence map›Paper›PMID 29784819›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Xenoprotein engineering via synthetic libraries.

Zachary P Gates, Alexander A Vinogradov, Anthony J Quartararo, Anupam Bandyopadhyay, Zi-Ning Choo, Ethan D Evans, Kathryn H Halloran, Alexander J Mijalis, Surin K Mong, Mark D Simon and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. De novo discovery of bicyclic cysteine-rich peptides targeting gasdermin D.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Review
  6. Miniprotein engineering for inhibition of PD-1/PD-L1 interaction.Protein science : a publication of the Protein Society · 2024
    Article
  7. Article
  8. Article
  9. Review
  10. Design and Engineering of Miniproteins.ACS bio & med chem Au · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Evolution as a Guide to DesigningInternational journal of molecular sciences · 2021
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 1 institution in 1 country.

Zachary P GatesDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139 zgates@mit.edu blp@mit.edu.
Alexander A VinogradovDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Anthony J QuartararoDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Anupam BandyopadhyayDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Zi-Ning ChooDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Ethan D EvansDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Kathryn H HalloranDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Alexander J MijalisDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Surin K MongDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Mark D SimonDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Eric A StandleyDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Evan D StyduharDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Sarah Z TaskerDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Faycal ToutiDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Jessica M WeberDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Jessica L WilsonDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Timothy F JamisonDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Bradley L PenteluteDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139 zgates@mit.edu blp@mit.edu.
Massachusetts Institute of Technology · US

Funding

Acquisition of Octet Biolayer Interferometry system for MIT biophysics facilityS10OD016326 · OD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI IMPERIALI, BARBARA · 2014 to 2014
$180k
NIH HHS S10 OD016326
6 · The paper itself

Abstract

Chemical methods have enabled the total synthesis of protein molecules of ever-increasing size and complexity. However, methods to engineer synthetic proteins comprising noncanonical amino acids have not kept pace, even though this capability would be a distinct advantage of the total synthesis approach to protein science. In this work, we report a platform for protein engineering based on the screening of synthetic one-bead one-compound protein libraries. Screening throughput approaching that of cell surface display was achieved by a combination of magnetic bead enrichment, flow cytometry analysis of on-bead screens, and high-throughput MS/MS-based sequencing of identified active compounds. Direct screening of a synthetic protein library by these methods resulted in the de novo discovery of mirror-image miniprotein-based binders to a ∼150-kDa protein target, a task that would be difficult or impossible by other means.

Indexed as

Peptide LibraryAmino AcidsCombinatorial Chemistry TechniquesFlow CytometryHumansMicrospheresProtein BindingProtein EngineeringProteinsTandem Mass SpectrometryAmino AcidsPeptide LibraryProteinsD-proteinflow cytometrymirror-image miniproteinprotein engineeringxenoprotein

Identifiers

PMID29784819
PMCPMC6003312
OpenAlexW2804806053

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.