ArticleEMBnet.journal2018
Genomic big data hitting the storage bottleneck.
Article in EMBnet.journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
24 citing papers in PubMed.
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- Critical assessment of on-premise approaches to scalable genome analysis.BMC bioinformatics · 2023Article
- Compression Algorithm for Colored de Bruijn Graphs.Algorithms in bioinformatics : ... International Workshop, WABI ..., proceedings. WABI (Workshop) · 2023Article
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- Genome-Wide Analysis of Palindrome Formation with Next-Generation Sequencing (GAPF-Seq) and a Bioinformatics Pipeline for Assessing De Novo Palindromes in Cancer Genomes.Methods in molecular biology (Clifton, N.J.) · 2023Article
- SARS-CoV-2 genomic epidemiology: data and sequencing infrastructure.Future microbiology · 2022Article
- Consilience of methods for phylogenetic analysis of variance.Evolution; international journal of organic evolution · 2022Article
- PEGR: a flexible management platform for reproducible epigenomic and genomic research.Genome biology · 2022Article
- GenoVault: a cloud based genomics repository.BioData mining · 2021Article
- GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasets.Briefings in bioinformatics · 2021Review
- BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters.GigaScience · 2021Article
- Distributed hybrid-indexing of compressed pan-genomes for scalable and fast sequence alignment.PloS one · 2021Article
- Carbapenemase screening in an Irish tertiary referral hospital: Best practice, or can we do better?Infection prevention in practice · 2020Article
- PEGR: a management platform for ChIP-based next generation sequencing pipelines.PEARC20 : Practice and Experience in Advanced Research Computing 2020 : Catch the wave : July 27-31, 2020, Portland, Or Virtual Conference. Practice and Experience in Advanced Research Computing (Conference) (2020 : Online) · 2020Article
- Integrative computational epigenomics to build data-driven gene regulation hypotheses.GigaScience · 2020Article
- Brick plots: an intuitive platform for visualizing multiparametric immunophenotyped cell clusters.BMC bioinformatics · 2020Article
- The Birth of Bio-data Science: Trends, Expectations, and Applications.Genomics, proteomics & bioinformatics · 2020Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
During the last decades, there is a vast data explosion in bioinformatics. Big data centres are trying to face this data crisis, reaching high storage capacity levels. Although several scientific giants examine how to handle the enormous pile of information in their cupboards, the problem remains unsolved. On a daily basis, there is a massive quantity of permanent loss of extensive information due to infrastructure and storage space problems. The motivation for sequencing has fallen behind. Sometimes, the time that is spent to solve storage space problems is longer than the one dedicated to collect and analyse data. To bring sequencing to the foreground, scientists have to slide over such obstacles and find alternative ways to approach the issue of data volume. Scientific community experiences the data crisis era, where, out of the box solutions may ease the typical research workflow, until technological development meets the needs of Bioinformatics.
Identifiers
29782620PMC5958914What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.