Evidence map›Paper›PMID 29781797›Full record

ArticleMicrobial genomics2018

From plants to nematodes: Serratia grimesii BXF1 genome reveals an adaptation to the modulation of multi-species interactions.

Francisco Nascimento, Cláudia Vicente, Peter Cock, Maria Tavares, Márcio Rossi, Koichi Hasegawa, Manuel Mota

Abstract read
In one paragraph

Article in Microbial genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Insights into the Role of Fungi in Pine Wilt Disease.Journal of fungi (Basel, Switzerland) · 2021
    Review
  8. Insects · 2021
    Article
  9. Genome Sequences ofBiology · 2020
    Article
  10. Article
  11. Bacterial Communities and Virulence Associated with Pine Wood NematodeInternational journal of molecular sciences · 2019
    Article
  12. The nematicide Serratia plymuthica M24T3 colonizes Arabidopsis thaliana, stimulates plant growth, and presents plant beneficial potential.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2019
    Article
  13. Frontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Francisco Nascimento2​Information and Computer Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.
Cláudia Vicente1​Nemalab/ICAAM - Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Departamento de Biologia, Universidade de Évora, Núcleo da Mitra, Ap. 94, 7002-554 Évora, Portugal.
Peter Cock2​Information and Computer Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.
Maria Tavares4​Departamento de Microbiologia, Laboratório de Bioprocessos, Universidade Federal de Santa Catarina, Florianópolis SC 88040-900, Brazil.
Márcio Rossi4​Departamento de Microbiologia, Laboratório de Bioprocessos, Universidade Federal de Santa Catarina, Florianópolis SC 88040-900, Brazil.
Koichi Hasegawa3​Department of Environmental Biology, College of Bioscience and Biotechnology, Chubu University, 1200 Matsumoto, Kasugai, Aichi 487-8501, Japan.
Manuel Mota1​Nemalab/ICAAM - Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Departamento de Biologia, Universidade de Évora, Núcleo da Mitra, Ap. 94, 7002-554 Évora, Portugal.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Serratia grimesii BXF1 is a bacterium with the ability to modulate the development of several eukaryotic hosts. Strain BXF1 was isolated from the pinewood nematode, Bursaphelenchus xylophilus, the causative agent of pine wilt disease affecting pine forests worldwide. This bacterium potentiates Bursaphelenchus xylophilus reproduction, acts as a beneficial pine endophyte, and possesses fungal and bacterial antagonistic activities, further indicating a complex role in a wide range of trophic relationships. In this work, we describe and analyse the genome sequence of strain BXF1, and discuss several important aspects of its ecological role. Genome analysis indicates the presence of several genes related to the observed production of antagonistic traits, plant growth regulation and the modulation of nematode development. Moreover, most of the BXF1 genes are involved in environmental and genetic information processing, which is consistent with its ability to sense and colonize several niches. The results obtained in this study provide the basis to a better understanding of the role and evolution of strain BXF1 as a mediator of interactions between organisms involved in a complex disease system. These results may also bring new insights into general Serratia and Enterobacteriaceae evolution towards multitrophic interactions.

Indexed as

EndophytesAdaptation, PhysiologicalAnimalsBase CompositionChitinasesGenes, BacterialGenome, BacterialGenomic IslandsNematodaPhylogenyPinusPlant DiseasesPlant ExudatesSerratiaSoil MicrobiologyWhole Genome SequencingChitinasesPlant ExudatesBursaphelenchus xylophilusendophytesnematodespine wilt diseaseplant-growth-promoting bacteriaSerratia

Identifiers

PMID29781797
PMCPMC6113876

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.