Evidence map›Paper›PMID 29781424›Full record

SynthesisEpidemiology and infection2018

Review analysis and impact of co-circulating H5N1 and H9N2 avian influenza viruses in Bangladesh.

Rokshana Parvin, Jahan Ara Begum, Mohammed Nooruzzaman, Emdadul Haque Chowdhury, Mohammad Rafiqul Islam, Thomas W Vahlenkamp

Open access · bronzeAbstract readSystematic Review
In one paragraph

Synthesis in Epidemiology and infection, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 63 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Rokshana ParvinDepartment of Pathology,Faculty of Veterinary Science,Bangladesh Agricultural University,Mymensingh 2202,Bangladesh.ORCID 0000-0002-2558-2735
Jahan Ara BegumDepartment of Pathology,Faculty of Veterinary Science,Bangladesh Agricultural University,Mymensingh 2202,Bangladesh.
Mohammed NooruzzamanDepartment of Pathology,Faculty of Veterinary Science,Bangladesh Agricultural University,Mymensingh 2202,Bangladesh.
Emdadul Haque ChowdhuryDepartment of Pathology,Faculty of Veterinary Science,Bangladesh Agricultural University,Mymensingh 2202,Bangladesh.
Mohammad Rafiqul IslamDepartment of Pathology,Faculty of Veterinary Science,Bangladesh Agricultural University,Mymensingh 2202,Bangladesh.
Thomas W VahlenkampFaculty of Veterinary Medicine,Center of Infectious Diseases, Institute of Virology, University of Leipzig,An den Tierkliniken 29, 04103 Leipzig,Germany.
Bangladesh Agricultural University · BDLeipzig University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Almost the full range of 16 haemagglutinin (HA) and nine neuraminidase subtypes of avian influenza viruses (AIVs) has been detected either in waterfowl, land-based poultry or in the environment in Bangladesh. AIV infections in Bangladesh affected a wide range of host species of terrestrial poultry. The highly pathogenic avian influenza (AI) H5N1 and low pathogenic AI H9N2 were found to co-circulate and be well entrenched in the poultry population, which has caused serious damage to the poultry industry since 2007. By reviewing the available scientific literature, the overall situation of AIVs in Bangladesh is discussed. All Bangladeshi (BD) H5N1 and H9N2 AIV sequences available at GenBank were downloaded along with other representative sequences to analyse the genetic diversity among the circulating AIVs in Bangladesh and to compare with the global situation. Three different H5N1 clades, 2.2.2, 2.3.2.1 and 2.3.4.2, have been detected in Bangladesh. Only 2.3.2.1a is still present. The BD LP H9N2 viruses mostly belonged to the H9 G1 lineage but segregated into many branches, and some of these shared internal genes with HP viruses of subtypes H7N3 and H5N1. However, these reassortment events might have taken place before introduction to Bangladesh. Currently, H9N2 viruses continue to evolve their HA cleavage, receptor binding and glycosylation sites. Multiple mutations in the HA gene associated with adaptation to mammalian hosts were also observed. Strict biosecurity at farms and gradual phasing out of live-bird markets could be the key measures to better control AIVs, whereas stamping out is not a practicable option in Bangladesh. Vaccination also could be an additional tool, which however, requires careful planning. Continuous monitoring of AIVs through systematic surveillance and genetic characterisation of the viruses remains a hallmark of AI control.

Indexed as

AnimalsBangladeshInfluenza A Virus, H5N1 SubtypeInfluenza A Virus, H9N2 SubtypeInfluenza in BirdsMutationPoultryPoultry DiseasesRisk FactorsAvian influenzaBangladeshco-circulationgenetic evolutionH5N1H9N2

Identifiers

PMID29781424
PMCPMC9134290
OpenAlexW2804407393

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.