Evidence map›Paper›PMID 29780628›Full record

ArticleJournal of thoracic disease2018

Comprehensive targeted super-deep next generation sequencing enhances differential diagnosis of solitary pulmonary nodules.

Mingzhi Ye, Shiyong Li, Weizhe Huang, Chunli Wang, Liping Liu, Jun Liu, Jilong Liu, Hui Pan, Qiuhua Deng, Hailing Tang and 15 more

Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in Journal of thoracic disease, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04957433 (Lung Health Check Biomarker Study), which is not on this map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04957433 unknown statusnot on this mapstarted 2020, after this paper: background citation

Lung Health Check Biomarker Study

TypeobservationalSponsorRoyal Marsden NHS Foundation TrustRan2020 to 2023Enrolled1,000ConditionsLung Cancer, CancerArmsBlood Specimen
3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Trial
  2. Liquid biopsy in lung cancer.Breathe (Sheffield, England) · 2025
    Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. TheJournal of thoracic disease · 2019
    Article
  9. Liquid biopsy for early stage lung cancer.Journal of thoracic disease · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 7 institutions in 2 countries.

Mingzhi YeBGI-Guangzhou Medical Laboratory, BGI-Shenzhen, Guangzhou 510006, China.
Shiyong LiBGI-Guangzhou Medical Laboratory, BGI-Shenzhen, Guangzhou 510006, China.
Weizhe HuangThe First Affiliated Hospital of Guangzhou Medical University, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou 510120, China.
Chunli WangTianjin Medical Laboratory, BGI-Tianjin, BGI-Shenzhen, Tianjin 300308, China.
Liping LiuThe First Affiliated Hospital of Guangzhou Medical University, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou 510120, China.
Jun LiuTianjin Medical Laboratory, BGI-Tianjin, BGI-Shenzhen, Tianjin 300308, China.
Jilong LiuBGI-Guangzhou Medical Laboratory, BGI-Shenzhen, Guangzhou 510006, China.
Hui PanThe First Affiliated Hospital of Guangzhou Medical University, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou 510120, China.
Qiuhua DengThe First Affiliated Hospital of Guangzhou Medical University, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou 510120, China.
Hailing TangThe First Affiliated Hospital of Guangzhou Medical University, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou 510120, China.
Long JiangThe First Affiliated Hospital of Guangzhou Medical University, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou 510120, China.
Weizhe HuangThe First Affiliated Hospital of Guangzhou Medical University, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou 510120, China.
Xi ChenTianjin Medical Laboratory, BGI-Tianjin, BGI-Shenzhen, Tianjin 300308, China.
Di ShaoBGI-Guangzhou Medical Laboratory, BGI-Shenzhen, Guangzhou 510006, China.
Zhiyu PengBGI Genomics, BGI-Shenzhen, Shenzhen 518083, China.
Renhua WuTianjin Medical Laboratory, BGI-Tianjin, BGI-Shenzhen, Tianjin 300308, China.
Jing ZhongBGI Genomics, BGI-Shenzhen, Shenzhen 518083, China.
Zhe WangBGI Genomics, BGI-Shenzhen, Shenzhen 518083, China.
Xiaoping ZhangBGI Genomics, BGI-Shenzhen, Shenzhen 518083, China.
Karsten KristiansenDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.
Jian WangBGI Genomics, BGI-Shenzhen, Shenzhen 518083, China.
Ye YinBGI Genomics, BGI-Shenzhen, Shenzhen 518083, China.
Mao MaoBGI Genomics, BGI-Shenzhen, Shenzhen 518083, China.
Jianxing HeThe First Affiliated Hospital of Guangzhou Medical University, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou 510120, China.
Wenhua LiangThe First Affiliated Hospital of Guangzhou Medical University, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou 510120, China.
BGI GenomicsGuangzhou Medical University · CNBGI Group (China) · CNFirst Affiliated Hospital of Guangzhou Medical University · CNTianjin Medical University · CNState Key Laboratory of Respiratory Disease · CNUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA non-invasive method to predict the malignancy of surgery-candidate solitary pulmonary nodules (SPN) is urgently needed.

methodsSuper-depth next generation sequencing (NGS) of 35 paired tissues and plasma DNA was performed as an attempt to develop an early diagnosis approach.

resultsOnly ~6% of malignant nodule patients had driver mutations in the circulating tumour DNA (ctDNA) with >10,000-fold sequencing depth, and the concordance of mutation between tDNA and ctDNA was 3.9%. The first innovative whole mutation scored model in this study predicted 33.3% of malignant SPN with 100% specificity.

conclusionsThese results showed that lung cancer gene-targeted deep capture sequencing is not efficient enough to achieve ideal sensitivity by simply increasing the sequencing depth of ctDNA from early candidates. The sequencing could not be evaluated hotspot mutations in the early tumour stage. Nevertheless, a larger cohort is required to optimize this model, and more techniques may be incorporated to benefit the SPN high-risk population.

Indexed as

circulating tumour DNA (ctDNA)early diagnosislung cancerSolid pulmonary noduletumor mutational burden (TMB)

Identifiers

PMID29780628
PMCPMC5945686
OpenAlexW2797268033

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.