Evidence map›Paper›PMID 29780479›Full record

ArticleChemical science2018

Pentacyclic adenine: a versatile and exceptionally bright fluorescent DNA base analogue.

Mattias Bood, Anders F Füchtbauer, Moa S Wranne, Jong Jin Ro, Sangamesh Sarangamath, Afaf H El-Sagheer, Déborah L M Rupert, Rachel S Fisher, Steven W Magennis, Anita C Jones and 6 more

Abstract read
In one paragraph

Article in Chemical science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Determination of two-photon absorption in nucleobase analogues: a QR-DFT perspective.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  10. Synthesis and application of aRSC chemical biology · 2021
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Interbase FRET in RNA: from A to Z.Nucleic acids research · 2019
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Mattias BoodDepartment of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden . Email: grotli@chem.gu.se.ORCID 0000-0003-1644-6915
Anders F FüchtbauerDepartment of Chemistry and Chemical Engineering, Chemistry and Biochemistry , Chalmers University of Technology , SE-412 96 Gothenburg , Sweden . Email: marcus.wilhelmsson@chalmers.se.ORCID 0000-0003-0223-5754
Moa S WranneDepartment of Chemistry and Chemical Engineering, Chemistry and Biochemistry , Chalmers University of Technology , SE-412 96 Gothenburg , Sweden . Email: marcus.wilhelmsson@chalmers.se.ORCID 0000-0003-3315-8288
Jong Jin RoDepartment of Chemistry , Division of Advanced Materials Science , Pohang University of Science and Technology (POSTECH) , Pohang 37673 , South Korea.
Sangamesh SarangamathDepartment of Chemistry and Chemical Engineering, Chemistry and Biochemistry , Chalmers University of Technology , SE-412 96 Gothenburg , Sweden . Email: marcus.wilhelmsson@chalmers.se.
Afaf H El-SagheerChemistry Branch , Faculty of Petroleum and Mining Engineering , Suez University , Suez 43721 , Egypt.ORCID 0000-0001-8706-1292
Déborah L M RupertDivision of Biological Physics , Department of Physics , Chalmers University of Technology , SE-412 96 Gothenburg , Sweden.
Rachel S FisherSchool of Chemistry , University of Edinburgh , The King's Buildings , Edinburgh EH9 3JJ , UK.
Steven W MagennisWestCHEM , School of Chemistry , University of Glasgow , Glasgow , G12 8QQ , UK.ORCID 0000-0002-4327-8366
Anita C JonesSchool of Chemistry , University of Edinburgh , The King's Buildings , Edinburgh EH9 3JJ , UK.
Fredrik HöökDivision of Biological Physics , Department of Physics , Chalmers University of Technology , SE-412 96 Gothenburg , Sweden.ORCID 0000-0003-1994-5015
Tom BrownDepartment of Chemistry , Chemistry Research Laboratory , University of Oxford , Oxford , OX1 3TA , UK.ORCID 0000-0002-6538-3036
Byeang Hyean KimDepartment of Chemistry , Division of Advanced Materials Science , Pohang University of Science and Technology (POSTECH) , Pohang 37673 , South Korea.ORCID 0000-0002-1602-8222
Anders DahlénAstraZeneca R&D , Innovative Medicines , Cardiovascular & Metabolic Diseases (CVMD) , Pepparedsleden 1, SE-431 83 Mölndal , Gothenburg , Sweden.
L Marcus WilhelmssonDepartment of Chemistry and Chemical Engineering, Chemistry and Biochemistry , Chalmers University of Technology , SE-412 96 Gothenburg , Sweden . Email: marcus.wilhelmsson@chalmers.se.ORCID 0000-0002-2193-6639
Morten GrøtliDepartment of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden . Email: grotli@chem.gu.se.ORCID 0000-0003-3621-4222

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Emissive base analogs are powerful tools for probing nucleic acids at the molecular level. Herein we describe the development and thorough characterization of pentacyclic adenine (pA), a versatile base analog with exceptional fluorescence properties. When incorporated into DNA, pA pairs selectively with thymine without perturbing the B-form structure and is among the brightest nucleobase analogs reported so far. Together with the recently established base analog acceptor qA

Identifiers

PMID29780479
PMCPMC5934695

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.