Evidence map›Paper›PMID 29780384›Full record

ArticleFrontiers in immunology2018

Discrimination Between Human Leukocyte Antigen Class I-Bound and Co-Purified HIV-Derived Peptides in Immunopeptidomics Workflows.

Thomas Partridge, Annalisa Nicastri, Anna E Kliszczak, Louis-Marie Yindom, Benedikt M Kessler, Nicola Ternette, Persephone Borrow

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
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  4. Benchmarking Software for DDA-PASEF Immunopeptidomics.Molecular & cellular proteomics : MCP · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Thomas PartridgeNuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Annalisa NicastriNuffield Department of Medicine, Target Discovery Institute, University of Oxford, Oxford, United Kingdom.
Anna E KliszczakNuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Louis-Marie YindomNuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Benedikt M KesslerNuffield Department of Medicine, Target Discovery Institute, University of Oxford, Oxford, United Kingdom.
Nicola TernetteNuffield Department of Medicine, Target Discovery Institute, University of Oxford, Oxford, United Kingdom.
Persephone BorrowNuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
University of Oxford · GBJenner Institute · GB

Funding

Targeting 5' leader-encoded defective ribosomal products for HIV T cell vaccinesR01AI118549 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI SHAW, GEORGE M · 2016 to 2020
$3.6M
GENE THERAPY FOR IMMUNE DEFICIENCIESZ01AI000645 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI DE RAVIN, SUK · 1992 to 2008
$873k
Intramural NIH HHS Z01 AI000645Medical Research Council MR/K012037Medical Research Council MR/K012037/1Medical Research Council MR/N023668/1NIAID NIH HHS R01 AI118549
6 · The paper itself

Abstract

Elucidation of novel peptides presented by human leukocyte antigen (HLA) class I alleles by immunopeptidomics constitutes a powerful approach that can inform the rational design of CD8

Indexed as

ProteomicsCD8-Positive T-LymphocytesEpitopes, T-Lymphocytegag Gene Products, Human Immunodeficiency VirusHistocompatibility Antigens Class IHIV-1HumansImmunoprecipitationMass SpectrometryWorkflowEpitopes, T-Lymphocytegag Gene Products, Human Immunodeficiency VirusHistocompatibility Antigens Class Iantigen presentationepitopeHIVhuman leukocyte antigenimmunopeptidomicsmajor histocompatibility complexmass spectrometry

Identifiers

PMID29780384
PMCPMC5946011
OpenAlexW2802183755

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.