Evidence map›Paper›PMID 29778232›Full record

ArticleCancer genetics2018

Nuclear BAP1 loss is common in intrahepatic cholangiocarcinoma and a subtype of hepatocellular carcinoma but rare in pancreatic ductal adenocarcinoma.

Asmaa Mosbeh, Khalil Halfawy, Wael S Abdel-Mageed, Dina Sweed, Mohamed H Abdel Rahman

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In one paragraph

Article in Cancer genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

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  9. The multiple roles of deubiquitinases in liver cancer.American journal of cancer research · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Asmaa MosbehNational Liver Institute Sustainable Sciences Institute Collaborative Research Center (NLISSICRC), Menoufia University, Egypt; Molecular Biology, Genetic Engineering and Biotechnology Research Institute, University of Sadat City, Egypt; Department of pathology, National Liver Institute (NLI), Menoufia University, Egypt.
Khalil HalfawyMolecular Biology, Genetic Engineering and Biotechnology Research Institute, University of Sadat City, Egypt.
Wael S Abdel-MageedGenetics Department, Faculty of Agriculture, Beni-Suif University, Egypt.
Dina SweedDepartment of pathology, National Liver Institute (NLI), Menoufia University, Egypt.
Mohamed H Abdel RahmanNational Liver Institute Sustainable Sciences Institute Collaborative Research Center (NLISSICRC), Menoufia University, Egypt; Department of pathology, National Liver Institute (NLI), Menoufia University, Egypt; Department of Ophthalmology, The Ohio State University, Columbus, OH, US; Division of Human Genetics, Department of Internal Medicine, The Ohio State University, Columbus, OH, US. Electronic address: mohamed.abdel-rahman@osumc.edu.
University of Sadat City · EGBeni-Suef University · EGMenoufia University · EGThe Ohio State University · US

Funding

Hereditary cancer predisposition syndromes and uveal melanomaR21CA191943 · NCI · OHIO STATE UNIVERSITY · PI ABDEL-RAHMAN, MOHAMED H. · 2015 to 2016
$368k
NCI NIH HHS R21 CA191943
6 · The paper itself

Abstract

Deletion in the 3p21 region, the chromosomal location of BAP1, has been reported in a subset of hepatocellular carcinoma (HCC), biliary and pancreatic cancers. This suggests that BAP1 could play a role in the pathogenesis of these tumors. We assessed the frequency of BAP1 loss by immunohistochemistry in 103 hepatic, biliary and pancreatic cancers. We also assessed chromosomal alterations in the BAP1 region in the same tumors by genotyping. We identified high frequency 4/8 (50%) of BAP1 loss in intrahepatic cholangicarcinoma (ICC). However the frequency was lower in HCC 9/51 (17.6%), pancreatic 1/42(2.4%) and extrahepatic biliary cancers (0/2). Loss of heterozygosity of at least one marker from the 3p21 region was observed in 75% of ICC, 52.9% of HCC and 45.2% of pancreatic cancers. Expression of hepatocytic (HepPar1) and bile duct (cytokeratin 7) markers were common (7/9, 77.8%) in the HCC tumors with loss or decrease of BAP1 compared with those with preserved BAP1 (18/42, 42.9%), (Fisher exact p = 0.0751). Our results confirm the high frequency of BAP1 alterations in ICC and low frequency in pancreatic cancers. It also suggests that BAP1 is commonly altered in a subtype of HCC with both hepatocytic and biliary differentiation. Further studies of the therapeutic implications of our findings are warranted.

Indexed as

Carcinoma, HepatocellularCarcinoma, Pancreatic DuctalCholangiocarcinomaFemaleGenotypeHumansLiver NeoplasmsMalePancreatic NeoplasmsTumor Suppressor ProteinsUbiquitin ThiolesteraseBAP1 protein, humanTumor Suppressor ProteinsUbiquitin Thiolesterase3p21 regionBAP1Liver cancerLoss of heterozygosityPancreatic cancer

Identifiers

PMID29778232
PMCPMC5996975
OpenAlexW2797271567

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.