Evidence map›Paper›PMID 29777484›Full record

ArticleCell stress & chaperones2018

Identification of differentially expressed microRNAs in Sahiwal (Bos indicus) breed of cattle during thermal stress.

Gyanendra Singh Sengar, Rajib Deb, Umesh Singh, Vivek Junghare, Saugata Hazra, T V Raja, Rani Alex, Ashish Kumar, R R Alyethodi, Rajiv Kant and 2 more

Open access · greenAbstract read
In one paragraph

Article in Cell stress & chaperones, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.9field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Gyanendra Singh SengarMolecular Genetics Laboratory, ICAR-Central Institute for Research on Cattle, -250 001, Meerut, Uttar Pradesh, India.
Rajib DebMolecular Genetics Laboratory, ICAR-Central Institute for Research on Cattle, -250 001, Meerut, Uttar Pradesh, India. drrajibdeb@gmail.com.
Umesh SinghMolecular Genetics Laboratory, ICAR-Central Institute for Research on Cattle, -250 001, Meerut, Uttar Pradesh, India.
Vivek JunghareDepartment of Biotechnology, Center of Nanotechnology, Indian Institute of Technology, Roorkee, Uttarakhand, India.
Saugata HazraDepartment of Biotechnology, Center of Nanotechnology, Indian Institute of Technology, Roorkee, Uttarakhand, India.
T V RajaMolecular Genetics Laboratory, ICAR-Central Institute for Research on Cattle, -250 001, Meerut, Uttar Pradesh, India.
Rani AlexMolecular Genetics Laboratory, ICAR-Central Institute for Research on Cattle, -250 001, Meerut, Uttar Pradesh, India.
Ashish KumarMolecular Genetics Laboratory, ICAR-Central Institute for Research on Cattle, -250 001, Meerut, Uttar Pradesh, India.
R R AlyethodiMolecular Genetics Laboratory, ICAR-Central Institute for Research on Cattle, -250 001, Meerut, Uttar Pradesh, India.
Rajiv KantSam Higginbottom University of Agriculture Technology & Science, Allahabad, India.
Subhash JaksharaOme Research Laboratory, Anand Agricultural University, Anand, Gujarat, India.
C G JoshiOme Research Laboratory, Anand Agricultural University, Anand, Gujarat, India.
Central Institute for Research on Cattle · INAnand Agricultural University · INIndian Institute of Technology Roorkee · INSam Higginbottom Institute of Agriculture · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

microRNAs (miRNAs) are a class of small non-coding RNAs that play key roles in post transcriptional gene regulation that influence various fundamental cellular processes, including the cellular responses during environmental stresses. However, perusal of literatures revealed few reports on the differential expression of miRNA during thermal stress in Indian native (Bos indicus) cattle breeds. The present investigation aimed to identify differentially expressed miRNAs during thermal stress in Sahiwal (Bos indicus) dairy cattle breed of India, adapted with tropical climate over a long period of time. Stress responses of the animals were characterized by determining various physiological as well as biochemical parameters and differential expression profile of major heat shock protein genes. Ion Torrent deep sequencing and CLC-genomic analysis identified a set of differentially expressed miRNAs during summer and winter seasons. Most of the identified differentially expressed miRNAs were found to target heat shock responsive genes especially members of heat shock protein (HSP) family. Real-time quantification-based analysis of selected miRNAs revealed that bta-mir-1248, bta-mir-2332, bta-mir-2478, and bta-mir-1839 were significantly (p < 0.01) over expressed while bta-mir-16a, bta-let-7b, bta-mir-142, and bta-mir-425 were significantly (p < 0.01) under expressed during summer in comparison to winter. The present study enlists differentially expressed miRNAs at different environmental temperatures in Sahiwal (Bos indicus) that may be importance for further understanding the role of miRNAs on thermo-regulatory mechanisms.

Indexed as

AnimalsCattleGene Expression ProfilingHeat-Shock ResponseHigh-Throughput Nucleotide SequencingMicroRNAsSequence Analysis, RNAMicroRNAsmiRNASahiwalThermal stress

Identifiers

PMID29777484
PMCPMC6111087
OpenAlexW2803809667

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.