Evidence map›Paper›PMID 29777224›Full record

ArticleNature immunology2018

Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza.

Jake Dunning, Simon Blankley, Long T Hoang, Mike Cox, Christine M Graham, Philip L James, Chloe I Bloom, Damien Chaussabel, Jacques Banchereau, Stephen J Brett and 4 more

Erratum issued Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Nature immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. It is linked to trial NCT00965354 (Mechanisms of Severe Acute Influenza Consortium), which is not on this map. Cited by 113 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed, 3 pooled it
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00965354 completednot on this map

Mechanisms of Severe Acute Influenza Consortium (MOSAIC)

TypeobservationalSponsorImperial College LondonRan2009 to 2011Enrolled131ConditionsInfluenza
3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 3 syntheses or guidelines pooled it, 165 citations in OpenAlex.

  1. Pooled it
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  13. Multivariate Host-Pathogen Interactions Driving Heterogeneous Viral Shedding and CD8medRxiv : the preprint server for health sciences · 2025
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53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 18 institutions in 3 countries.

Jake DunningRespiratory Infection Section, National Heart and Lung Institute, Imperial College London, London, UK.
Simon BlankleyLaboratory of Immunoregulation & Infection, The Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0001-9602-9075
Long T HoangRespiratory Infection Section, National Heart and Lung Institute, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-6808-6758
Mike CoxGenomic Medicine, National Heart and Lung Institute, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-4002-1506
Christine M GrahamLaboratory of Immunoregulation & Infection, The Francis Crick Institute, London, UK.
Philip L JamesGenomic Medicine, National Heart and Lung Institute, Imperial College London, London, UK.
Chloe I BloomLaboratory of Immunoregulation & Infection, The Francis Crick Institute, London, UK.
Damien ChaussabelSidra Medical and Research Centre, Doha, Qatar.
Jacques BanchereauThe Jackson Laboratory for Genomic Medicine, Farmington, USA.ORCID http://orcid.org/0000-0003-3535-7221
Stephen J BrettSurgery and Cancer, National Heart and Lung Institute, Imperial College London, London, UK.ORCID http://orcid.org/0000-0003-4545-8413
Miriam F MoffattGenomic Medicine, National Heart and Lung Institute, Imperial College London, London, UK.
Anne O'GarraLaboratory of Immunoregulation & Infection, The Francis Crick Institute, London, UK. anne.ogarra@crick.ac.uk.ORCID http://orcid.org/0000-0001-9845-6134
Peter J M OpenshawRespiratory Infection Section, National Heart and Lung Institute, Imperial College London, London, UK. p.openshaw@imperial.ac.uk.ORCID http://orcid.org/0000-0002-7220-2555
MOSAIC Investigators
Imperial College London · GBThe Francis Crick Institute · GBNIHR Imperial Biomedical Research Centre · GBPublic Health England · GBRoslin Institute · GBImperial College Healthcare NHS Trust · GBLiverpool School of Tropical Medicine · GBUniversity College London · GBUniversity of Liverpool · GBUniversity of Oxford · GBCentre for Inflammation Research · GBChelsea and Westminster Hospital NHS Foundation Trust · GBJackson Laboratory · USLung Institute · USRoyal Brompton & Harefield NHS Foundation Trust · GBSidra Medical and Research Center · QAUniversity of Nottingham · GBWellcome Sanger Institute · GB

Funding

Medical Research Council G0600371Medical Research Council MC_G1001212Medical Research Council MC_U117565642Medical Research Council MR/R502121/1Wellcome Trust FC001126
6 · The paper itself

Abstract

Transcriptional profiles and host-response biomarkers are used increasingly to investigate the severity, subtype and pathogenesis of disease. We now describe whole-blood mRNA signatures and concentrations of local and systemic immunological mediators in 131 adults hospitalized with influenza, from whom extensive clinical and investigational data were obtained by MOSAIC investigators. Signatures reflective of interferon-related antiviral pathways were common up to day 4 of symptoms in patients who did not require mechanical ventilator support; in those who needed mechanical ventilation, an inflammatory, activated-neutrophil and cell-stress or death ('bacterial') pattern was seen, even early in disease. Identifiable bacterial co-infection was not necessary for this 'bacterial' signature but was able to enhance its development while attenuating the early 'viral' signature. Our findings emphasize the importance of timing and severity in the interpretation of host responses to acute viral infection and identify specific patterns of immune-system activation that might enable the development of novel diagnostic and therapeutic tools for severe influenza.

Indexed as

TranscriptomeAdolescentAdultAgedBiomarkersDisease ProgressionFemaleHumansInfluenza, HumanInterferonsMaleMiddle AgedNeutrophilsRNA, MessengerYoung AdultBiomarkersInterferonsRNA, Messenger

Identifiers

PMID29777224
PMCPMC5985949
OpenAlexW2803990310

What OpenQuestion holds

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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.