Evidence map›Paper›PMID 29776928›Full record

ArticleApplied and environmental microbiology2018

Enrichment of Clinically Relevant Organisms in Spontaneous Preterm-Delivered Placentas and Reagent Contamination across All Clinical Groups in a Large Pregnancy Cohort in the United Kingdom.

Lydia J Leon, Ronan Doyle, Ernest Diez-Benavente, Taane G Clark, Nigel Klein, Philip Stanier, Gudrun E Moore

Open access · hybridAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 79 citations in OpenAlex.

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  5. Evaluation of the Human Placental Microbiota in Early- and Late-Onset Pre-Eclampsia.High blood pressure & cardiovascular prevention : the official journal of the Italian Society of Hypertension · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Lydia J LeonGenetics and Genomic Medicine, UCL GOS Institute of Child Health, UCL, London, United Kingdom lydia.leon.11@ucl.ac.uk.ORCID 0000-0001-5228-9713
Ronan DoyleMicrobiology, Virology and Infection Control, Great Ormond Street Hospital, NHS Foundation Trust, London, United Kingdom.ORCID 0000-0001-5001-1945
Ernest Diez-BenaventeFaculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Taane G ClarkFaculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom.ORCID 0000-0001-8985-9265
Nigel KleinInfection, Immunity, Inflammation, UCL GOS Institute of Child Health, UCL, London, United Kingdom.
Philip StanierGenetics and Genomic Medicine, UCL GOS Institute of Child Health, UCL, London, United Kingdom.
Gudrun E MooreGenetics and Genomic Medicine, UCL GOS Institute of Child Health, UCL, London, United Kingdom.
University College London · GBLondon School of Hygiene & Tropical Medicine · GBGreat Ormond Street Hospital for Children NHS Foundation Trust · GB

Funding

Department of HealthMedical Research Council G0801438Medical Research Council MC_PC_15103Medical Research Council MR/K000551/1Medical Research Council MR/K022741/1Medical Research Council MR/M004597/1Medical Research Council MR/M01360X/1Medical Research Council MR/N010469/1
6 · The paper itself

Abstract

In this study, differences in the placental microbiota from term and preterm deliveries in a large pregnancy cohort in the United Kingdom were studied by using 16S-targeted amplicon sequencing. The impacts of contamination from DNA extraction, PCR reagents, and the delivery itself were also examined. A total of 400 placental samples from 256 singleton pregnancies were analyzed, and differences between spontaneous preterm-, nonspontaneous preterm-, and term-delivered placentas were investigated. DNA from recently delivered placentas was extracted, and screening for bacterial DNA was carried out by using targeted sequencing of the 16S rRNA gene on the Illumina MiSeq platform. Sequenced reads were analyzed for the presence of contaminating operational taxonomic units (OTUs) identified via sequencing of negative extraction and PCR-blank samples. Differential abundances and between-sample (beta) diversity metrics were then compared. A large proportion of the reads sequenced from the extracted placental samples mapped to OTUs that were also found for negative extractions. Striking differences in the compositions of samples were also observed, according to whether the placenta was delivered abdominally or vaginally, providing strong circumstantial evidence for delivery contamination as an important contributor to observed microbial profiles. When OTU- and genus-level abundances were compared between the groups of interest, a number of organisms were enriched in the spontaneous preterm-delivery cohort, including organisms that have been associated previously with adverse pregnancy outcomes, specifically

Indexed as

MicrobiotaBacteriaBacterial InfectionsCohort StudiesDNA, BacterialFemaleHumansInfant, NewbornPlacentaPregnancyPremature BirthRNA, Ribosomal, 16SUnited KingdomVaginaDNA, BacterialRNA, Ribosomal, 16Scontaminationinfectionmicrobiomepregnancypreterm birth

Identifiers

PMID29776928
PMCPMC6029081
OpenAlexW2802250094

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.