Evidence map›Paper›PMID 29775757›Full record

ArticleGene2018

Molecular characterization of physis tissue by RNA sequencing.

Christopher R Paradise, Catalina Galeano-Garces, Daniela Galeano-Garces, Amel Dudakovic, Todd A Milbrandt, Daniel B F Saris, Aaron J Krych, Marcel Karperien, Gabriel B Ferguson, Denis Evseenko and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Gene, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  4. Nonpathological inflammation drives the development of an avian flight adaptation.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Christopher R ParadiseCenter for Regenerative Medicine, Mayo Clinic, Rochester, MN, USA; Department of Orthopedic Surgery, Mayo Clinic, Rochester, MN, USA; Mayo Clinic Graduate School of Biomedical Sciences, Mayo Clinic, Rochester, MN, USA.
Catalina Galeano-GarcesDepartment of Orthopedic Surgery, Mayo Clinic, Rochester, MN, USA; Department of Developmental BioEngineering, University of Twente, Enschede, Netherlands.
Daniela Galeano-GarcesDepartment of Orthopedic Surgery, Mayo Clinic, Rochester, MN, USA.
Amel DudakovicDepartment of Orthopedic Surgery, Mayo Clinic, Rochester, MN, USA.
Todd A MilbrandtDepartment of Orthopedic Surgery, Mayo Clinic, Rochester, MN, USA.
Daniel B F SarisCenter for Regenerative Medicine, Mayo Clinic, Rochester, MN, USA; Department of Orthopedic Surgery, Mayo Clinic, Rochester, MN, USA; Department of Developmental BioEngineering, University of Twente, Enschede, Netherlands; Department of Orthopaedics, University Medical Center Utrecht, Utrecht University, Utrecht, Netherlands.
Aaron J KrychDepartment of Orthopedic Surgery, Mayo Clinic, Rochester, MN, USA; Department of Sports Medicine, Mayo Clinic, Rochester, MN, USA.
Marcel KarperienDepartment of Developmental BioEngineering, University of Twente, Enschede, Netherlands.
Gabriel B FergusonDepartment of Orthopaedic Surgery, University of Southern California (USC), Los Angeles, CA, USA.
Denis EvseenkoDepartment of Orthopaedic Surgery, University of Southern California (USC), Los Angeles, CA, USA.
Scott M RiesterDepartment of Orthopedic Surgery, Mayo Clinic, Rochester, MN, USA.
Andre J van WijnenCenter for Regenerative Medicine, Mayo Clinic, Rochester, MN, USA; Department of Orthopedic Surgery, Mayo Clinic, Rochester, MN, USA; Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA. Electronic address: vanWijnen.Andre@mayo.edu.
A Noelle LarsonDepartment of Orthopedic Surgery, Mayo Clinic, Rochester, MN, USA. Electronic address: Larson.Noelle@mayo.edu.
Mayo Clinic in Arizona · USUniversity of Southern California · USUniversity of Twente · NL

Funding

Mayo Clinic Center for Translational Science ActivitiesUL1TR000135 · NCATS · MAYO CLINIC ROCHESTER · PI KHOSLA, SUNDEEP · 2012 to 2015
$41.2M
Molecular Control of Bone FormationR01AR049069 · NIAMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WESTENDORF, JENNIFER J · 2003 to 2021
$5.8M
GP130/STAT3 signalling in articular cartilage development and regenerationR01AR071734 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI EVSEENKO, DENIS, LYONS, KAREN M. · 2018 to 2022
$3.0M
Dissecting molecular mechanisms implicated in age- and osteoarthritis-related decline in anabolism in articular cartilageR01AG058624 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI EVSEENKO, DENIS · 2019 to 2023
$1.7M
Epigenetic Modulation of the Epiphyseal Growth Plate to Treat Pediatric Limb DeformitiesR03AR066342 · NIAMS · MAYO CLINIC ROCHESTER · PI LARSON, ANNALISE NOELLE · 2014 to 2016
$239k
NIAMS NIH HHS R01 AR049069NIAMS NIH HHS R01 AR071734NIAMS NIH HHS R03 AR066342NIA NIH HHS R01 AG058624
6 · The paper itself

Abstract

The physis is a well-established and anatomically distinct cartilaginous structure that is crucial for normal long-bone development and growth. Abnormalities in physis function are linked to growth plate disorders and other pediatric musculoskeletal diseases. Understanding the molecular pathways operative in the physis may permit development of regenerative therapies to complement surgically-based procedures that are the current standard of care for growth plate disorders. Here, we performed next generation RNA sequencing on mRNA isolated from human physis and other skeletal tissues (e.g., articular cartilage and bone; n = 7 for each tissue). We observed statistically significant enrichment of gene sets in the physis when compared to the other musculoskeletal tissues. Further analysis of these upregulated genes identified physis-specific networks of extracellular matrix proteins including collagens (COL2A1, COL6A1, COL9A1, COL14A1, COL16A1) and matrilins (MATN1, MATN2, MATN3), and signaling proteins in the WNT pathway (WNT10B, FZD1, FZD10, DKK2) or the FGF pathway (FGF10, FGFR4). Our results provide further insight into the gene expression networks that contribute to the physis' unique structural composition and regulatory signaling networks. Physis-specific expression profiles may guide ongoing initiatives in tissue engineering and cell-based therapies for treatment of growth plate disorders and growth modulation therapies. Furthermore, our findings provide new leads for therapeutic drug discovery that would permit future intervention through pharmacological rather than surgical strategies.

Indexed as

TranscriptomeBiomarkersBone and BonesCartilageCartilage, ArticularCollagenGene Expression ProfilingMusclesRNA, MessengerSequence Analysis, RNASignal TransductionBiomarkersCollagenRNA, MessengerBoneCartilageGrowth platePhysisRNA sequencing

Identifiers

PMID29775757
PMCPMC5994380
OpenAlexW2803837548

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.