Evidence map›Paper›PMID 29773649›Full record

ArticleThe Journal of biological chemistry2018

PTAP motif duplication in the p6 Gag protein confers a replication advantage on HIV-1 subtype C.

Shilpee Sharma, Prabhu S Arunachalam, Malini Menon, Viswanath Ragupathy, Ravi Vijaya Satya, Joshua Jebaraj, Shambhu Ganeshappa Aralaguppe, Chaitra Rao, Sreshtha Pal, Shanmugam Saravanan and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Shilpee SharmaFrom the Jawaharlal Nehru Centre for Advanced Scientific Research, HIV-AIDS Laboratory, Bengaluru 56006, India.
Prabhu S ArunachalamFrom the Jawaharlal Nehru Centre for Advanced Scientific Research, HIV-AIDS Laboratory, Bengaluru 56006, India.
Malini MenonFrom the Jawaharlal Nehru Centre for Advanced Scientific Research, HIV-AIDS Laboratory, Bengaluru 56006, India.
Viswanath Ragupathythe Laboratory of Molecular Virology, Division of Emerging and Transmission Transmitted Diseases, Office of Blood Review and Research, Center for Biologics Evaluation and Research, Food and Drug Administration, Silver Spring, Maryland 20993.
Ravi Vijaya SatyaGRAIL Inc., Menlo Park, California 94025, and.
Joshua JebarajFrom the Jawaharlal Nehru Centre for Advanced Scientific Research, HIV-AIDS Laboratory, Bengaluru 56006, India.
Shambhu Ganeshappa AralaguppeFrom the Jawaharlal Nehru Centre for Advanced Scientific Research, HIV-AIDS Laboratory, Bengaluru 56006, India.
Chaitra RaoFrom the Jawaharlal Nehru Centre for Advanced Scientific Research, HIV-AIDS Laboratory, Bengaluru 56006, India.
Sreshtha PalFrom the Jawaharlal Nehru Centre for Advanced Scientific Research, HIV-AIDS Laboratory, Bengaluru 56006, India.
Shanmugam Saravananthe Y. R. Gaitonde Centre for AIDS Research and Education, Chennai 600113, India.
Kailapuri G Murugavelthe Y. R. Gaitonde Centre for AIDS Research and Education, Chennai 600113, India.
Pachamuthu Balakrishnanthe Y. R. Gaitonde Centre for AIDS Research and Education, Chennai 600113, India.
Suniti Solomonthe Y. R. Gaitonde Centre for AIDS Research and Education, Chennai 600113, India.
Indira Hewlettthe Laboratory of Molecular Virology, Division of Emerging and Transmission Transmitted Diseases, Office of Blood Review and Research, Center for Biologics Evaluation and Research, Food and Drug Administration, Silver Spring, Maryland 20993.
Udaykumar RangaFrom the Jawaharlal Nehru Centre for Advanced Scientific Research, HIV-AIDS Laboratory, Bengaluru 56006, India, udaykumar@jncasr.ac.in.
Jawaharlal Nehru Centre for Advanced Scientific Research · INYR Gaitonde Centre for AIDS Research and Education · INCenter for Biologics Evaluation and Research · USGrail (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

HIV-1 subtype C (HIV-1C) may duplicate longer amino acid stretches in the p6 Gag protein, leading to the creation of an additional Pro-Thr/Ser-Ala-Pro (PTAP) motif necessary for viral packaging. However, the biological significance of a duplication of the PTAP motif for HIV-1 replication and pathogenesis has not been experimentally validated. In a longitudinal study of two different clinical cohorts of select HIV-1 seropositive, drug-naive individuals from India, we found that 8 of 50 of these individuals harbored a mixed infection of viral strains discordant for the PTAP duplication. Conventional and next-generation sequencing of six primary viral quasispecies at multiple time points disclosed that in a mixed infection, the viral strains containing the PTAP duplication dominated the infection. The dominance of the double-PTAP viral strains over a genetically similar single-PTAP viral clone was confirmed in viral proliferation and pairwise competition assays. Of note, in the proximity ligation assay, double-PTAP Gag proteins exhibited a significantly enhanced interaction with the host protein tumor susceptibility gene 101 (Tsg101). Moreover, Tsg101 overexpression resulted in a biphasic effect on HIV-1C proliferation, an enhanced effect at low concentration and an inhibitory effect only at higher concentrations, unlike a uniformly inhibitory effect on subtype B strains. In summary, our results indicate that the duplication of the PTAP motif in the p6 Gag protein enhances the replication fitness of HIV-1C by engaging the Tsg101 host protein with a higher affinity. Our results have implications for HIV-1 pathogenesis, especially of HIV-1C.

Indexed as

Virus ReplicationAdultAmino Acid MotifsCells, CulturedDNA-Binding ProteinsEndosomal Sorting Complexes Required for TransportFemalegag Gene Products, Human Immunodeficiency VirusHIV-1HIV InfectionsHost-Pathogen InteractionsHumansLongitudinal StudiesMaleMiddle AgedProtein Interaction MapsDNA-Binding ProteinsEndosomal Sorting Complexes Required for Transportgag Gene Products, Human Immunodeficiency Virusp6 gag protein, Human immunodeficiency virus 1Transcription FactorsTsg101 ProteinGagHIV-1Chuman immunodeficiency virus (HIV)infectious diseaseNGSPTAP duplicationReplication advantageviral DNAviral proteinviral replication

Identifiers

PMID29773649
PMCPMC6066301
OpenAlexW2803679822

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.