Evidence map›Paper›PMID 29771522›Full record

ArticleThe journal of physical chemistry. B2018

Hydronium Ions Accompanying Buried Acidic Residues Lead to High Apparent Dielectric Constants in the Interior of Proteins.

Xiongwu Wu, Bernard R Brooks

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Accurate pThe journal of physical chemistry. B · 2022
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Xiongwu WuLaboratory of Computational Biology, National Heart, Lung, and Blood Institute (NHLBI) , National Institutes of Health (NIH) , Bethesda , Maryland 20892 , United States.
Bernard R BrooksLaboratory of Computational Biology, National Heart, Lung, and Blood Institute (NHLBI) , National Institutes of Health (NIH) , Bethesda , Maryland 20892 , United States.ORCID 0000-0002-3586-2730

Funding

Development Of Theoretical Methods For Studying Biological MacromoleculesZIAHL001051 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI BROOKS, BERNARD R · 2009 to 2025
$16.2M
Molecular Dynamics Simulations Of Biological MacromoleculesZIAHL001050 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI BROOKS, BERNARD R · 2009 to 2025
$12.9M
Molecular Dynamics Simulations of MacromoleculesZ01HL001050 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI BROOKS, BERNARD R · 1998 to 2008
$1.4M
Intramural NIH HHS Z01 HL001050Intramural NIH HHS Z99 HL999999Intramural NIH HHS ZIA HL001050
6 · The paper itself

Abstract

Internal ionizable groups are known to play important roles in protein functions. A mystery that has attracted decades of extensive experimental and theoretical studies is the apparent dielectric constants experienced by buried ionizable groups, which are much higher than values expected for protein interiors. Many interpretations have been proposed, such as water penetration, conformational relaxation, local unfolding, protein intrinsic backbone fluctuations, etc. However, these interpretations conflict with many experimental observations. The virtual mixture of multiple states (VMMS) simulation method developed in our lab provides a direct approach for studying the equilibrium of multiple chemical states and can monitor p K

Indexed as

Crystallography, X-RayKineticsMicrococcal NucleaseMolecular Dynamics SimulationMutagenesis, Site-DirectedOnium CompoundsStaphylococcushydronium ionMicrococcal NucleaseOnium Compounds

Identifiers

PMID29771522
PMCPMC6413497

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.