Evidence map›Paper›PMID 29769736›Full record

ArticleNature chemical biology2018

tRNA tracking for direct measurements of protein synthesis kinetics in live cells.

Ivan L Volkov, Martin Lindén, Javier Aguirre Rivera, Ka-Weng Ieong, Mikhail Metelev, Johan Elf, Magnus Johansson

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Active transport of tRNAs facilitates distributed protein synthesis.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
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  7. Dynamic binding of the bacterial chaperone Trigger factor to translating ribosomes inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. Spatiotemporal kinetics of the SRP pathway in liveProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Cellular perception of growth rate and the mechanistic origin of bacterial growth law.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Review
  18. Real-time measurements of aminoglycoside effects on protein synthesis in live cells.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ivan L VolkovDepartment of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.
Martin LindénDepartment of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.
Javier Aguirre RiveraDepartment of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.
Ka-Weng IeongDepartment of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.
Mikhail MetelevDepartment of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.
Johan ElfDepartment of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.ORCID http://orcid.org/0000-0001-5522-1810
Magnus JohanssonDepartment of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden. m.johansson@icm.uu.se.ORCID http://orcid.org/0000-0001-8811-2629
Uppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our ability to directly relate results from test-tube biochemical experiments to the kinetics in living cells is very limited. Here we present experimental and analytical tools to directly study the kinetics of fast biochemical reactions in live cells. Dye-labeled molecules are electroporated into bacterial cells and tracked using super-resolved single-molecule microscopy. Trajectories are analyzed by machine-learning algorithms to directly monitor transitions between bound and free states. In particular, we measure the dwell time of tRNAs on ribosomes, and hence achieve direct measurements of translation rates inside living cells at codon resolution. We find elongation rates with tRNA

Indexed as

Protein BiosynthesisAlgorithmsCodonColoring AgentsElectroporationEscherichia coliFluorescent DyesKineticsMachine LearningMicroscopy, FluorescenceMicroscopy, VideoRibosomesRibosome Subunits, Small, BacterialRNA, MessengerRNA, TransferRNA, Transfer, MetCodonColoring AgentsFluorescent DyesfMet-tRNA(fMet)RNA, MessengerRNA, TransferRNA, Transfer, Met

Identifiers

PMID29769736
PMCPMC6124642
OpenAlexW2804476197

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.