Evidence map›Paper›PMID 29766673›Full record

ArticleCancer medicine2018

Genomic characterization of individuals presenting extreme phenotypes of high and low risk to develop tobacco-induced lung cancer.

Juan Pablo Fusco, Guillermo Pita, María José Pajares, Maria Pilar Andueza, Ana Patiño-García, Juan P de-Torres, Alfonso Gurpide, Javier Zulueta, Rosario Alonso, Nuria Alvarez and 17 more

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

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  10. Phosphodiesterase 10A Is a Key Mediator of Lung Inflammation.Journal of immunology (Baltimore, Md. : 1950) · 2021
    Article
  11. Article
  12. Article
  13. Biomarkers in Lung Cancer Screening: Achievements, Promises, and Challenges.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2019
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 5 institutions in 2 countries.

Juan Pablo Fusco *Department of Oncology, Clinica Universidad de Navarra, Pamplona, Spain.
Guillermo Pita *Human Genetics Group, Spanish National Cancer Centre (CNIO), Madrid, Spain.
María José Pajares *Health Research Institute of Navarra (IDISNA), Pamplona, Spain.
Maria Pilar AnduezaDepartment of Oncology, Clinica Universidad de Navarra, Pamplona, Spain.
Ana Patiño-GarcíaHealth Research Institute of Navarra (IDISNA), Pamplona, Spain.
Juan P de-TorresHealth Research Institute of Navarra (IDISNA), Pamplona, Spain.
Alfonso GurpideDepartment of Oncology, Clinica Universidad de Navarra, Pamplona, Spain.
Javier ZuluetaHealth Research Institute of Navarra (IDISNA), Pamplona, Spain.
Rosario AlonsoHuman Genetics Group, Spanish National Cancer Centre (CNIO), Madrid, Spain.
Nuria AlvarezHuman Genetics Group, Spanish National Cancer Centre (CNIO), Madrid, Spain.
Ruben PioHealth Research Institute of Navarra (IDISNA), Pamplona, Spain.
Ignacio MeleroHealth Research Institute of Navarra (IDISNA), Pamplona, Spain.
Miguel F SanmamedDepartment of Oncology, Clinica Universidad de Navarra, Pamplona, Spain.
Maria Rodriguez RuizDepartment of Oncology, Clinica Universidad de Navarra, Pamplona, Spain.
Ignacio Gil-BazoDepartment of Oncology, Clinica Universidad de Navarra, Pamplona, Spain.
Jose María Lopez-PicazoDepartment of Oncology, Clinica Universidad de Navarra, Pamplona, Spain.
Ciro CasanovaPulmonary Department and Research Department, Hospital Universitario La Candelaria, Santa Cruz de Tenerife, Spain.
Rebeca Baz DavilaResearch Unit, Hospital Universitario La Candelaria, Santa Cruz de Tenerife, Spain.
Antonio AgudoUnit of Nutrition and Cancer, Cancer Epidemiology Research Program, Catalan Institute of Oncology-ICO, IDIBELL, Barcelona, Spain.
Maria Dolores LozanoHealth Research Institute of Navarra (IDISNA), Pamplona, Spain.
Alvaro GonzalezHealth Research Institute of Navarra (IDISNA), Pamplona, Spain.
Nuria SalaUnit of Nutrition and Cancer, Cancer Epidemiology Research Program, Catalan Institute of Oncology-ICO, IDIBELL, Barcelona, Spain.
Eva ArdanazHealth Research Institute of Navarra (IDISNA), Pamplona, Spain.
Javier BenitezHuman Genetics Group, Spanish National Cancer Centre (CNIO), Madrid, Spain.
Luis MontuengaHealth Research Institute of Navarra (IDISNA), Pamplona, Spain.
Anna Gonzalez-Neira *Human Genetics Group, Spanish National Cancer Centre (CNIO), Madrid, Spain.
Jose Luis Perez-Gracia *Department of Oncology, Clinica Universidad de Navarra, Pamplona, Spain.ORCID http://orcid.org/0000-0003-4941-9075
Navarre Institute of Health Research · ESSpanish National Cancer Research Centre · ESHospital Universitario Nuestra Señora de Candelaria · ESInstitut d'Investigació Biomédica de Bellvitge · ESInstituto de Salud Pública de Navarra · ES

Funding

Fundación SEOM and Fundación Salud 2000Government of NavarraSpanish Society of Medical Oncology
6 · The paper itself

Abstract

Single nucleotide polymorphisms (SNPs) may modulate individual susceptibility to carcinogens. We designed a genome-wide association study to characterize individuals presenting extreme phenotypes of high and low risk to develop tobacco-induced non-small cell lung cancer (NSCLC), and we validated our results. We hypothesized that this strategy would enrich the frequencies of the alleles that contribute to the observed traits. We genotyped 2.37 million SNPs in 95 extreme phenotype individuals, that is: heavy smokers that either developed NSCLC at an early age (extreme cases); or did not present NSCLC at an advanced age (extreme controls), selected from a discovery set (n = 3631). We validated significant SNPs in 133 additional subjects with extreme phenotypes selected from databases including >39,000 individuals. Two SNPs were validated: rs12660420 (p

Indexed as

ATP10Dcancer riskextreme phenotypesgenome-wide association studynon-small cell lung cancerPDE10Asingle nucleotide polymorphismtobacco

Identifiers

PMID29766673
PMCPMC6051154
OpenAlexW2804831779

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.