Evidence map›Paper›PMID 29765071›Full record

ArticleScientific reports2018

Effects of cold acclimation and dsRNA injections on Gs1l gene splicing in Drosophila montana.

David Hopkins, Tapio Envall, Noora Poikela, Olli T Pentikäinen, Maaria Kankare

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

David HopkinsUniversity of Jyväskylä, Department of Biological and Environmental Science, Survontie 9, FI-40014, Jyväskylä, Finland.
Tapio EnvallUniversity of Jyväskylä, Department of Biological and Environmental Science, Survontie 9, FI-40014, Jyväskylä, Finland.
Noora PoikelaUniversity of Jyväskylä, Department of Biological and Environmental Science, Survontie 9, FI-40014, Jyväskylä, Finland.
Olli T PentikäinenUniversity of Jyväskylä, Department of Biological and Environmental Science, Survontie 9, FI-40014, Jyväskylä, Finland.
Maaria KankareUniversity of Jyväskylä, Department of Biological and Environmental Science, Survontie 9, FI-40014, Jyväskylä, Finland. s.maaria.kankare@jyu.fi.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alternative splicing, in which one gene produce multiple transcripts, may influence how adaptive genes respond to specific environments. A newly produced transcriptome of Drosophila montana shows the Gs1-like (Gs1l) gene to express multiple splice variants and to be down regulated in cold acclimated flies with increased cold tolerance. Gs1l's effect on cold tolerance was further tested by injecting cold acclimated and non-acclimated flies from two distantly located northern and southern fly populations with double stranded RNA (dsRNA) targeting Gs1l. While both populations had similar cold acclimation responses, dsRNA injections only effected the northern population. The nature of splicing expression was then investigated in the northern population by confirming which Gs1l variants are present, by comparing the expression of different gene regions and by predicting the protein structures of splices using homology modelling. We find different splices of Gs1l not only appear to have independent impacts on cold acclimation but also elicit different effects in populations originating from two very different environments. Also, at the protein level, Gs1l appears homologous to the human HDHD1A protein and some splices might produce functionally different proteins though this needs to be verified in future studies by measuring the particular protein levels. Taken together, Gs1l appears to be an interesting new candidate to test how splicing influences adaptations.

Indexed as

AcclimatizationAlternative SplicingAnimalsCold ClimateDrosophilaDrosophila ProteinsHumansInjectionsNucleotidasesProtein IsoformsProteinsRNA, Double-StrandedSequence Homology, Amino AcidDrosophila ProteinsNucleotidasesProtein IsoformsProteinsPUDP protein, humanRNA, Double-Stranded

Identifiers

PMID29765071
PMCPMC5953924

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.