Evidence map›Paper›PMID 29765057›Full record

ArticleScientific reports2018

Critical amino acids for the insecticidal activity of Vip3Af from Bacillus thuringiensis: Inference on structural aspects.

N Banyuls, C S Hernández-Rodríguez, J Van Rie, J Ferré

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Biophysical Analysis of Vip3Aa Toxin Mutants Before and After Activation.International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

N BanyulsERI de Biotecnología y Biomedicina (BIOTECMED), Departamento de Genética, Universitat de València, 46100, Burjassot, Spain.
C S Hernández-RodríguezERI de Biotecnología y Biomedicina (BIOTECMED), Departamento de Genética, Universitat de València, 46100, Burjassot, Spain.
J Van RieBayer CropScience N.V., Ghent, Belgium.
J FerréERI de Biotecnología y Biomedicina (BIOTECMED), Departamento de Genética, Universitat de València, 46100, Burjassot, Spain. juan.ferre@uv.es.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vip3 vegetative insecticidal proteins from Bacillus thuringiensis are an important tool for crop protection against caterpillar pests in IPM strategies. While there is wide consensus on their general mode of action, the details of their mode of action are not completely elucidated and their structure remains unknown. In this work the alanine scanning technique was performed on 558 out of the total of 788 amino acids of the Vip3Af1 protein. From the 558 residue substitutions, 19 impaired protein expression and other 19 substitutions severely compromised the insecticidal activity against Spodoptera frugiperda. The latter 19 substitutions mainly clustered in two regions of the protein sequence (amino acids 167-272 and amino acids 689-741). Most of these substitutions also decreased the activity to Agrotis segetum. The characterisation of the sensitivity to proteases of the mutant proteins displaying decreased insecticidal activity revealed 6 different band patterns as evaluated by SDS-PAGE. The study of the intrinsic fluorescence of most selected mutants revealed only slight shifts in the emission peak, likely indicating only minor changes in the tertiary structure. An in silico modelled 3D structure of Vip3Af1 is proposed for the first time.

Indexed as

Amino Acid SubstitutionAlanineAmino Acid MotifsAnimalsBacillus thuringiensisBacterial ProteinsModels, MolecularMolecular Docking SimulationProtein StabilityProtein Structure, TertiarySpodopteraAlanineBacterial ProteinsVip3A protein, Bacillus thuringiensis

Identifiers

PMID29765057
PMCPMC5953952

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.