Evidence map›Paper›PMID 29764979›Full record

ReviewThe EMBO journal2018

The complex relationship between TFEB transcription factor phosphorylation and subcellular localization.

Rosa Puertollano, Shawn M Ferguson, James Brugarolas, Andrea Ballabio

Open access · bronzeAbstract readReview
In one paragraph

Review in The EMBO journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 323 papers.

0numbers the graph read from it
0cells of the map it votes in
323citing papers in PubMed
29.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

323 citing papers in PubMed, 507 citations in OpenAlex.

  1. Article
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  7. Genome-Wide Identification and Expression Analysis of theCurrent issues in molecular biology · 2026
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  13. Review
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  16. Cancers · 2026
    Review
  17. Review
  18. Review
  19. TFEB and MCOLN1 are important forFrontiers in cellular and infection microbiology · 2026
    Article
  20. Article

263 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 2 countries.

Rosa PuertollanoCell Biology and Physiology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA puertolr@nhlbi.nih.gov shawn.ferguson@yale.edu James.Brugarolas@utsouthwestern.edu ballabio@tigem.it.ORCID 0000-0002-1106-5489
Shawn M FergusonProgram in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, CT, USA puertolr@nhlbi.nih.gov shawn.ferguson@yale.edu James.Brugarolas@utsouthwestern.edu ballabio@tigem.it.ORCID 0000-0002-3092-7718
James BrugarolasKidney Cancer Program, Simmons Comprehensive Cancer Center, The University of Texas Southwestern Medical Center, Dallas, TX, USA puertolr@nhlbi.nih.gov shawn.ferguson@yale.edu James.Brugarolas@utsouthwestern.edu ballabio@tigem.it.ORCID 0000-0002-8575-499X
Andrea BallabioTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli (Naples), Italy puertolr@nhlbi.nih.gov shawn.ferguson@yale.edu James.Brugarolas@utsouthwestern.edu ballabio@tigem.it.ORCID 0000-0003-1381-4604
Baylor College of Medicine · USNational Institutes of Health · USThe University of Texas Southwestern Medical Center · USYale University · US

Funding

University of Texas Southwestern Medical Center SPORE in Kidney CancerP50CA196516 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI James Brugarolas · 2016 to 2026
$24.7M
Lysosome biogenesis and homeostasisZIAHL006151 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI PUERTOLLANO, ROSA · 2012 to 2025
$15.0M
Yale Alzheimer Disease Research CenterP50AG047270 · NIA · YALE UNIVERSITY · PI STRITTMATTER, STEPHEN M · 2015 to 2019
$8.3M
MODULATION OF CELLULAR CLEARANCE TO TREAT HUMAN DISEASER01NS078072 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI BALLABIO, ANDREA · 2012 to 2020
$3.1M
Molecular mechanisms that match lysosome function to cellular demandR01GM105718 · NIGMS · YALE UNIVERSITY · PI FERGUSON, SHAWN · 2013 to 2022
$2.9M
Evaluation of the BAP1 tumor suppressor gene in renal cell carcinomaR01CA175754 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI BRUGAROLAS, JAMES · 2014 to 2018
$1.6M
NCI NIH HHS P50 CA196516NCI NIH HHS R01 CA175754NIA NIH HHS P50 AG047270NIGMS NIH HHS R01 GM105718NINDS NIH HHS R01 NS078072
6 · The paper itself

Abstract

The MiT-TFE family of basic helix-loop-helix leucine-zipper transcription factors includes four members: TFEB, TFE3, TFEC, and MITF Originally described as oncogenes, these factors play a major role as regulators of lysosome biogenesis, cellular energy homeostasis, and autophagy. An important mechanism by which these transcription factors are regulated involves their shuttling between the surface of lysosomes, the cytoplasm, and the nucleus. Such dynamic changes in subcellular localization occur in response to nutrient fluctuations and various forms of cell stress and are mediated by changes in the phosphorylation of multiple conserved amino acids. Major kinases responsible for MiT-TFE protein phosphorylation include mTOR, ERK, GSK3, and AKT In addition, calcineurin de-phosphorylates MiT-TFE proteins in response to lysosomal calcium release. Thus, through changes in the phosphorylation state of MiT-TFE proteins, lysosome function is coordinated with the cellular metabolic state and cellular demands. This review summarizes the evidence supporting MiT-TFE regulation by phosphorylation at multiple key sites. Elucidation of such regulatory mechanisms is of fundamental importance to understand how these transcription factors contribute to both health and disease.

Indexed as

AutophagyBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCell NucleusCytoplasmEnergy MetabolismGene Expression RegulationHumansLysosomesPhosphorylationTOR Serine-Threonine KinasesBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsMTOR protein, humanTFEB protein, humanTOR Serine-Threonine KinasesautophagylysosomemTORnucleo‐cytoplasmic shuttlingTFEB

Identifiers

PMID29764979
PMCPMC5983138
OpenAlexW2803875384

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.