Evidence map›Paper›PMID 29764938›Full record

ArticleThe Journal of biological chemistry2018

Redistribution of SERCA calcium pump conformers during intracellular calcium signaling.

Olga N Raguimova, Nikolai Smolin, Elisa Bovo, Siddharth Bhayani, Joseph M Autry, Aleksey V Zima, Seth L Robia

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Dynamics-Driven Allostery Underlies CaBiophysical journal · 2020
    Article
  12. Atomistic Structure and Dynamics of the CaInternational journal of molecular sciences · 2020
    Article
  13. Review
  14. Endoplasmic Reticulum Calcium Pumps and Tumor Cell Differentiation.International journal of molecular sciences · 2020
    Review
  15. Primary Active CaCold Spring Harbor perspectives in biology · 2020
    Review
  16. Article
  17. Novel approach for quantification of endoplasmic reticulum CaAmerican journal of physiology. Heart and circulatory physiology · 2019
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Olga N RaguimovaFrom the Department of Cell and Molecular Physiology, Loyola University Chicago, Maywood, Illinois 60153 and.
Nikolai SmolinFrom the Department of Cell and Molecular Physiology, Loyola University Chicago, Maywood, Illinois 60153 and.
Elisa BovoFrom the Department of Cell and Molecular Physiology, Loyola University Chicago, Maywood, Illinois 60153 and.
Siddharth BhayaniFrom the Department of Cell and Molecular Physiology, Loyola University Chicago, Maywood, Illinois 60153 and.
Joseph M Autrythe Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, Minnesota 55455.
Aleksey V ZimaFrom the Department of Cell and Molecular Physiology, Loyola University Chicago, Maywood, Illinois 60153 and.
Seth L RobiaFrom the Department of Cell and Molecular Physiology, Loyola University Chicago, Maywood, Illinois 60153 and srobia@luc.edu.
Loyola University Chicago · USUniversity of Minnesota · US

Funding

Structural Determinants of Calcium Pump RegulationR01HL092321 · NHLBI · LOYOLA UNIVERSITY CHICAGO · PI Seth L Robia · 2008 to 2026
$8.9M
Loyola Research Computing CoreG20RR030939 · NCRR · LOYOLA UNIVERSITY CHICAGO · PI KENNEDY, RICHARD H. · 2010 to 2010
$2.7M
Calcium release channel dysfunction: molecular mechanismsR01HL130231 · NHLBI · LOYOLA UNIVERSITY CHICAGO · PI ZIMA, ALEKSEY V · 2016 to 2019
$1.5M
Basic and Clinical Research Training for Medical StudentsT35HL120835 · NHLBI · LOYOLA UNIVERSITY CHICAGO · PI ZELEZNIK-LE, NANCY J · 2015 to 2024
$628k
NCRR NIH HHS G20 RR030939NHLBI NIH HHS R01 HL092321NHLBI NIH HHS R01 HL130231NHLBI NIH HHS T35 HL120835
6 · The paper itself

Abstract

The conformational changes of a calcium transport ATPase were investigated with molecular dynamics (MD) simulations as well as fluorescence resonance energy transfer (FRET) measurements to determine the significance of a discrete structural element for regulation of the conformational dynamics of the transport cycle. Previous MD simulations indicated that a loop in the cytosolic domain of the SERCA calcium transporter facilitates an open-to-closed structural transition. To investigate the significance of this structural element, we performed additional MD simulations and new biophysical measurements of SERCA structure and function. Rationally designed

Indexed as

Calcium SignalingCalciumCrystallography, X-RayEndoplasmic ReticulumHumansModels, MolecularMolecular Dynamics SimulationProtein BindingProtein ConformationRNA, Small InterferingSarcoplasmic Reticulum Calcium-Transporting ATPasesATP2A1 protein, humanCalciumRNA, Small InterferingSarcoplasmic Reticulum Calcium-Transporting ATPasescalcium ATPasecalcium imagingcalcium intracellular releasecalcium transportconformational changeendoplasmic reticulum (ER)fluorescence resonance energy transfer (FRET)membrane biophysicsmembrane transportsarcoplasmic reticulum (SR)

Identifiers

PMID29764938
PMCPMC6052202
OpenAlexW2803177263

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.