Evidence map›Paper›PMID 29764918›Full record

ArticleGenes & development2018

A feed-forward relay integrates the regulatory activities of Bicoid and Orthodenticle via sequential binding to suboptimal sites.

Rhea R Datta, Jia Ling, Jesse Kurland, Xiaotong Ren, Zhe Xu, Gozde Yucel, Jackie Moore, Leila Shokri, Isabel Baker, Timothy Bishop and 5 more

Abstract read
In one paragraph

Article in Genes & development, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Breaking anterior-posterior symmetry in the moth flybioRxiv : the preprint server for biology · 2025
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. In Situ Hybridization as a Method to Examine Gene Regulatory Activity In Vivo.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. The power of the (imperfect) palindrome: Sequence-specific roles of palindromic motifs in gene regulation.BioEssays : news and reviews in molecular, cellular and developmental biology · 2022
    Review
  13. Transcriptional enhancers and their communication with gene promoters.Cellular and molecular life sciences : CMLS · 2021
    Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Rhea R DattaCenter for Developmental Genetics, Department of Biology, New York University, New York, New York 10003, USA.ORCID 0000-0002-2382-8930
Jia LingCenter for Developmental Genetics, Department of Biology, New York University, New York, New York 10003, USA.
Jesse KurlandDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA.
Xiaotong RenCenter for Developmental Genetics, Department of Biology, New York University, New York, New York 10003, USA.
Zhe XuCenter for Developmental Genetics, Department of Biology, New York University, New York, New York 10003, USA.
Gozde YucelCenter for Developmental Genetics, Department of Biology, New York University, New York, New York 10003, USA.
Jackie MooreCenter for Developmental Genetics, Department of Biology, New York University, New York, New York 10003, USA.
Leila ShokriDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA.
Isabel BakerCenter for Developmental Genetics, Department of Biology, New York University, New York, New York 10003, USA.
Timothy BishopCenter for Developmental Genetics, Department of Biology, New York University, New York, New York 10003, USA.
Paolo StruffiCenter for Developmental Genetics, Department of Biology, New York University, New York, New York 10003, USA.
Rimma LevinaCenter for Developmental Genetics, Department of Biology, New York University, New York, New York 10003, USA.
Martha L BulykDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA.
Robert J JohnstonDepartment of Biology, Johns Hopkins University, Baltimore, Maryland 21218, USA.
Stephen SmallCenter for Developmental Genetics, Department of Biology, New York University, New York, New York 10003, USA.

Funding

High-Throughput Identification of Tissue/Cell-Type-Specific Cis Regulatory ModuleR01HG005287 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI BULYK, MARTHA L · 2010 to 2016
$3.4M
Regulatory Logic of a Transcription Factor Family in two Developmental ContextsR01GM106090 · NIGMS · NEW YORK UNIVERSITY · PI SMALL, STEPHEN J · 2014 to 2017
$1.4M
NHGRI NIH HHS R01 HG005287NIGMS NIH HHS R01 GM106090
6 · The paper itself

Abstract

The K50 (lysine at amino acid position 50) homeodomain (HD) protein Orthodenticle (Otd) is critical for anterior patterning and brain and eye development in most metazoans. In

Indexed as

Gene Expression Regulation, DevelopmentalAmino Acid MotifsAnimalsBody PatterningDrosophila melanogasterDrosophila ProteinsEmbryonic DevelopmentEnhancer Elements, GeneticHomeodomain ProteinsProtein BindingTrans-Activatorsbcd protein, DrosophilaDrosophila ProteinsHomeodomain Proteinsoc protein, DrosophilaTrans-ActivatorsBicoidembryoenhancerOrthodenticlesuboptimal bindingtranscription factor binding

Identifiers

PMID29764918
PMCPMC6004077

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.