Evidence map›Paper›PMID 29763735›Full record

ArticleJournal of structural biology2018

Effects of flexibility of the α2 chain of type I collagen on collagenase cleavage.

Arya Mekkat, Erik Poppleton, Bo An, Robert Visse, Hideaki Nagase, David L Kaplan, Barbara Brodsky, Yu-Shan Lin

Abstract read
In one paragraph

Article in Journal of structural biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. [Research progress of natural collagen peptides and its skincare efficacy].Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi · 2022
    Article
  4. Prokaryotic Collagen-Like Proteins as Novel Biomaterials.Frontiers in bioengineering and biotechnology · 2022
    Review
  5. Article
  6. Article
  7. Tension in fibrils suppresses their enzymatic degradation - A molecular mechanism for 'use it or lose it'.Matrix biology : journal of the International Society for Matrix Biology · 2020
    Review
  8. Dissecting MMP PThe Journal of biological chemistry · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Arya MekkatDepartment of Chemistry, Tufts University, Medford, MA, USA.
Erik PoppletonDepartment of Biomedical Engineering, Tufts University, Medford, MA, USA.
Bo AnDepartment of Biomedical Engineering, Tufts University, Medford, MA, USA.
Robert VisseKennedy Institute of Rheumatology, University of Oxford, Oxford, UK.
Hideaki NagaseKennedy Institute of Rheumatology, University of Oxford, Oxford, UK.
David L KaplanDepartment of Biomedical Engineering, Tufts University, Medford, MA, USA.
Barbara BrodskyDepartment of Biomedical Engineering, Tufts University, Medford, MA, USA. Electronic address: barbara.brodsky@tufts.edu.
Yu-Shan LinDepartment of Chemistry, Tufts University, Medford, MA, USA. Electronic address: yu-shan.lin@tufts.edu.
Tufts University · USUniversity of Oxford · GB

Funding

Stuctural studies of triple-helical proteinsR01GM060048 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI BRODSKY, BARBARA M · 1999 to 2016
$5.1M
Biomaterial Applications of Recombinant Bacterial CollagensR01EB011620 · NIBIB · TUFTS UNIVERSITY MEDFORD · PI BRODSKY, BARBARA M, KAPLAN, DAVID L. · 2010 to 2013
$1.3M
NIBIB NIH HHS R01 EB011620NIGMS NIH HHS R01 GM060048
6 · The paper itself

Abstract

Cleavage of collagen by collagenases such as matrix metalloproteinase 1 (MMP-1) is a key step in development, tissue remodeling, and tumor proliferation. The abundant heterotrimeric type I collagen composed of two α1(I) chains and one α2(I) chain is efficiently cleaved by MMP-1 at a unique site in the triple helix, a process which may be initiated by local unfolding within the peptide chains. Atypical homotrimers of the α1(I) chain, found in embryonic and cancer tissues, are very resistant to MMP cleavage. To investigate MMP-1 cleavage, recombinant homotrimers were constructed with sequences from the MMP cleavage regions of human collagen chains inserted into a host bacterial collagen protein system. All triple-helical constructs were cleaved by MMP-1, with α2(I) homotrimers cleaved efficiently at a rate similar to that seen for α1(II) and α1(III) homotrimers, while α1(I) homotrimers were cleaved at a much slower rate. The introduction of destabilizing Gly to Ser mutations within the human collagenase susceptible region of the α2(I) chain did not interfere with MMP-1 cleavage. Molecular dynamics simulations indicated a greater degree of transient hydrogen bond breaking in α2(I) homotrimers compared with α1(I) homotrimers at the MMP-1 cleavage site, and showed an extensive disruption of hydrogen bonding in the presence of a Gly to Ser mutation, consistent with chymotrypsin digestion results. This study indicates that α2(I) homotrimers are susceptible to MMP-1, proves that the presence of an α1(I) chain is not a requirement for α2(I) cleavage, and supports the importance of local unfolding of α2(I) in collagenase cleavage.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesCell ProliferationCollagenCollagenasesCollagen Type IHumansHydrogen BondingMatrix Metalloproteinase 1Molecular Dynamics SimulationNeoplasmsProtein BindingProtein ConformationProtein Conformation, alpha-HelicalStreptococcus pyogenesBacterial ProteinsCollagenCollagenasesCollagen Type IMatrix Metalloproteinase 1Scl2 protein, StreptococcusCleavage sitesCollagenaseHomotrimerMMP-1Molecular dynamicsTriple helixType I collagenα1(I) chainα2(I) chain

Identifiers

PMID29763735
PMCPMC6089644
OpenAlexW2800389754

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.