Evidence map›Paper›PMID 29762170›Full record

ArticleAIDS (London, England)2018

A compartmentalized type I interferon response in the gut during chronic HIV-1 infection is associated with immunopathogenesis.

Stephanie M Dillon, Kejun Guo, Gregory L Austin, Sara Gianella, Phillip A Engen, Ece A Mutlu, John Losurdo, Garth Swanson, Prachi Chakradeo, Ali Keshavarzian and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in AIDS (London, England), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  12. Gut Innate Immunity and HIV Pathogenesis.Current HIV/AIDS reports · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Granzyme BGut microbes
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Stephanie M DillonUniversity of Colorado Anschutz Medical Campus, Aurora, Colorado.
Kejun GuoUniversity of Colorado Anschutz Medical Campus, Aurora, Colorado.
Gregory L AustinUniversity of Colorado Anschutz Medical Campus, Aurora, Colorado.
Sara GianellaUniversity of California, San Diego, La Jolla, California.
Phillip A EngenRush University Medical Center, Chicago, Illinois, USA.
Ece A MutluRush University Medical Center, Chicago, Illinois, USA.
John LosurdoRush University Medical Center, Chicago, Illinois, USA.
Garth SwansonRush University Medical Center, Chicago, Illinois, USA.
Prachi ChakradeoRush University Medical Center, Chicago, Illinois, USA.
Ali KeshavarzianRush University Medical Center, Chicago, Illinois, USA.
Alan L LandayRush University Medical Center, Chicago, Illinois, USA.
Mario L SantiagoUniversity of Colorado Anschutz Medical Campus, Aurora, Colorado.
Cara C WilsonUniversity of Colorado Anschutz Medical Campus, Aurora, Colorado.
Rush University Medical Center · USUniversity of Colorado Anschutz Medical Campus · USUniversity of California, San Diego · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI David Mitchell Smith · 1994 to 2026
$78.4M
UCSD Department of Medicine HIV/AIDS Clinical Trials UnitUM1AI069432 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TIMOTHY J. WILKIN · 2012 to 2026
$50.4M
Role of Type I IFNs in Mucosal HIV-1 Immunity and PathogenesisR01AI134220 · NIAID · UNIVERSITY OF COLORADO DENVER · PI SANTIAGO, MARIO LUIS, WILSON, CARA C. · 2017 to 2021
$2.7M
APOBEC3/Rfv3 and Immunoglobulin Somatic HypermutationR01AI116603 · NIAID · UNIVERSITY OF COLORADO DENVER · PI SANTIAGO, MARIO LUIS · 2016 to 2020
$2.5M
Mechanisms of HIV-associated Disruption of Intestinal HomeostasisR01DK088663 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI WILSON, CARA C. · 2010 to 2013
$1.6M
Effect of Declining Sex Hormones on HIV persistence in HIV Infected Women on ARTR21HD094646 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GIANELLA WEIBEL, SARA · 2017 to 2018
$441k
Effect of Sex Hormones on HIV persistenceR21AI134295 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GIANELLA WEIBEL, SARA · 2017 to 2018
$426k
NIAID NIH HHS P30 AI036214NIAID NIH HHS R01 AI116603NIAID NIH HHS R01 AI134220NIAID NIH HHS R21 AI134295NIAID NIH HHS UM1 AI069432NICHD NIH HHS R21 HD094646NIDDK NIH HHS R01 DK088663
6 · The paper itself

Abstract

OBJECTIVE(S): Type I interferon (IFN-I) responses confer both protective and pathogenic effects in persistent virus infections. IFN-I diversity, stage of infection and tissue compartment may account for this dichotomy. The gut is a major site of early HIV-1 replication and microbial translocation, but the nature of the IFN-I response in this compartment remains unclear.

designSamples were obtained from two IRB-approved cross-sectional studies. The first study included individuals with chronic, untreated HIV-1 infection (n = 24) and age/sex-balanced uninfected controls (n = 14). The second study included antiretroviral-treated, HIV-1-infected individuals (n = 15) and uninfected controls (n = 15).

methodsThe expression of 12 IFNα subtypes, IFNβ and antiviral IFN-stimulated genes (ISGs) were quantified in peripheral blood mononuclear cells (PBMCs) and colon biopsies using real-time PCR and next-generation sequencing. In untreated HIV-1-infected individuals, associations between IFN-I responses and gut HIV-1 RNA levels as well as previously established measures of colonic and systemic immunological indices were determined.

resultsIFNα1, IFNα2, IFNα4, IFNα5 and IFNα8 were upregulated in PBMCs during untreated chronic HIV-1 infection, but IFNβ was undetectable. By contrast, IFNβ was upregulated and all IFNα subtypes were downregulated in gut tissue. Gut ISG levels positively correlated with gut HIV-1 RNA and immune activation, microbial translocation and inflammation markers. Gut IFN-I responses were not significantly different between HIV-1-infected individuals on antiretroviral treatment and uninfected controls.

conclusionThe IFN-I response is compartmentalized during chronic untreated HIV-1 infection, with IFNβ being more predominant in the gut. Gut IFN-I responses are associated with immunopathogenesis, and viral replication is likely a major driver of this response.

Indexed as

AdultBiopsyColonCross-Sectional StudiesFemaleGene Expression ProfilingHIV InfectionsHumansImmunologic FactorsInterferon Type IIntestinal MucosaLeukocytes, MononuclearMaleMiddle AgedYoung AdultImmunologic FactorsInterferon Type I

Identifiers

PMID29762170
PMCPMC6054446
OpenAlexW2803877418

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.