Evidence map›Paper›PMID 29761465›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2018

A Multi-Omics Database for Parasitic Nematodes and Trematodes.

John Martin, Rahul Tyagi, Bruce A Rosa, Makedonka Mitreva

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

John MartinMcDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO, USA.
Rahul TyagiMcDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO, USA.
Bruce A RosaMcDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO, USA.
Makedonka MitrevaMcDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO, USA. mmitreva@wustl.edu.

Funding

COMPARATIVE GENOMICS OF PARASITIC NEMATODESR01AI081803 · NIAID · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2009 to 2018
$3.1M
EVOLUTION OF THE NEMATODE INTESTINE, A KEY HOST INTERFACER01GM097435 · NIGMS · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2011 to 2019
$2.1M
COMPARATIVE GENOMICS OF PARASITIC NEMATODESR56AI081803 · NIAID · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2019 to 2019
$697k
NIAID NIH HHS R01 AI081803NIAID NIH HHS R56 AI081803NIGMS NIH HHS R01 GM097435
6 · The paper itself

Abstract

Helminth.net ( www.helminth.net ) is a web-based resource that was launched in 2000 as simply " Nematode.net " to host and investigate gene sequences from nematode genomes. Over the years it has evolved to become the moniker for a collection of databases: Nematode.net and Trematode.net . These databases host information for 73 nematode (roundworms) and 17 trematode (flatworms) species and serve as backbone for a number of tools that allow users to query slices of the data for multifactorial combinations of species-omics properties. Recent focus has been on inclusion of gene and protein expression data, population genomics and cross-kingdom interactions (metagenomics datasets). This chapter describes the website, the available tools and some of the new features.

Indexed as

Databases, GeneticGenome, HelminthGenomicsSoftwareAnimalsComputational BiologyHelminthiasisHelminthsMetabolic Networks and PathwaysMetagenomicsMicrobial InteractionsMolecular Sequence AnnotationNematodaProteomeTrematodaWeb BrowserProteomeBLASTDatabaseFunctional annotationGenome browserMetagenomeNematodesProteomeSearchTranscriptomeTrematodes

Identifiers

PMID29761465
PMCPMC6314195

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.