Evidence map›Paper›PMID 29761460›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2018

A Primer for the Rat Genome Database (RGD).

Stanley J F Laulederkind, G Thomas Hayman, Shur-Jen Wang, Jennifer R Smith, Victoria Petri, Matthew J Hoffman, Jeff De Pons, Marek A Tutaj, Omid Ghiasvand, Monika Tutaj and 3 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. PhenoGeneRanker: Gene and Phenotype Prioritization Using Multiplex Heterogeneous Networks.IEEE/ACM transactions on computational biology and bioinformatics
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Stanley J F LaulederkindDepartment of Biomedical Engineering, Medical College of Wisconsin and Marquette University, Milwaukee, WI, USA. slaulede@mcw.edu.
G Thomas HaymanDepartment of Biomedical Engineering, Medical College of Wisconsin and Marquette University, Milwaukee, WI, USA.
Shur-Jen WangDepartment of Biomedical Engineering, Medical College of Wisconsin and Marquette University, Milwaukee, WI, USA.
Jennifer R SmithDepartment of Biomedical Engineering, Medical College of Wisconsin and Marquette University, Milwaukee, WI, USA.
Victoria PetriDepartment of Biomedical Engineering, Medical College of Wisconsin and Marquette University, Milwaukee, WI, USA.
Matthew J HoffmanGenomic Sciences and Precision Medicine Center, Medical College of Wisconsin, Milwaukee, WI, USA.
Jeff De PonsDepartment of Biomedical Engineering, Medical College of Wisconsin and Marquette University, Milwaukee, WI, USA.
Marek A TutajDepartment of Biomedical Engineering, Medical College of Wisconsin and Marquette University, Milwaukee, WI, USA.
Omid GhiasvandDepartment of Biomedical Engineering, Medical College of Wisconsin and Marquette University, Milwaukee, WI, USA.
Monika TutajDepartment of Biomedical Engineering, Medical College of Wisconsin and Marquette University, Milwaukee, WI, USA.
Jyothi ThotaDepartment of Biomedical Engineering, Medical College of Wisconsin and Marquette University, Milwaukee, WI, USA.
Melinda R DwinellGenomic Sciences and Precision Medicine Center, Medical College of Wisconsin, Milwaukee, WI, USA.
Mary ShimoyamaDepartment of Biomedical Engineering, Medical College of Wisconsin and Marquette University, Milwaukee, WI, USA.

Funding

RAT GENOME DATABASER01HL064541 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI ANNE E. KWITEK · 1999 to 2026
$50.0M
Resource ProjectU41HG002273 · NHGRI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI THOMAS, PAUL D. · 2012 to 2021
$34.7M
NHGRI NIH HHS U41 HG002273NHLBI NIH HHS R01 HL064541
6 · The paper itself

Abstract

The laboratory rat, Rattus norvegicus, is an important model of human health and disease, and experimental findings in the rat have relevance to human physiology and disease. The Rat Genome Database (RGD, http://rgd.mcw.edu ) is a model organism database that provides access to a wide variety of curated rat data including disease associations, phenotypes, pathways, molecular functions, biological processes and cellular components for genes, quantitative trait loci, and strains. We present an overview of the database followed by specific examples that can be used to gain experience in employing RGD to explore the wealth of functional data available for the rat.

Indexed as

Databases, GeneticGenomeGenomicsAnimalsComputational BiologyData AnalysisData MiningGene OntologyPhenotypeQuantitative Trait LociRatsSearch EngineSoftwareUser-Computer InterfaceWeb BrowserDatabaseGeneGenomicsOntologyQuantitative trait locusRat

Identifiers

PMID29761460
PMCPMC6487669

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.