Evidence map›Paper›PMID 29760811›Full record

ArticleClinical epigenetics2018

Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes.

Emma E Thompson, Jessie Nicodemus-Johnson, Kyung Won Kim, James E Gern, Daniel J Jackson, Robert F Lemanske, Carole Ober

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 2 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 2 syntheses or guidelines pooled it, 79 citations in OpenAlex.

  1. Pooled it
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  4. The HIV Reservoir and Immune Landscape Across the Life Course of Women: Implications for Cure Strategies.American journal of reproductive immunology (New York, N.Y. : 1989) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Emma E Thompson *1Department of Human Genetics, The University of Chicago, 920 E 58th St, CLSC Room 501, Chicago, IL 60637 USA.
Jessie Nicodemus-Johnson *1Department of Human Genetics, The University of Chicago, 920 E 58th St, CLSC Room 501, Chicago, IL 60637 USA.
Kyung Won Kim *1Department of Human Genetics, The University of Chicago, 920 E 58th St, CLSC Room 501, Chicago, IL 60637 USA.
James E Gern2School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI USA.
Daniel J Jackson2School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI USA.
Robert F Lemanske2School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI USA.
Carole Ober1Department of Human Genetics, The University of Chicago, 920 E 58th St, CLSC Room 501, Chicago, IL 60637 USA.
University of Chicago · USUniversity of Wisconsin–Madison · US

Funding

University of Wisconsin Institute for Clinical and Translational ResearchUL1TR002373 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI ELIZABETH S BURNSIDE, Allan R. Brasier · 2017 to 2026
$75.9M
Institutional Clinical and Translational Science AwardUL1TR000427 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2012 to 2016
$32.2M
Virus-Bacterial Interactions and Exacerba of AsthmaP01HL070831 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI GERN, JAMES E. · 2002 to 2017
$31.3M
Regulation and expression of HLA-G in asthmatic airwaysU19AI095230 · NIAID · UNIVERSITY OF CHICAGO · PI KRISHNAN, JERRY A. · 2011 to 2016
$10.5M
Prenatal Origins of AsthmaR01HL129735 · NHLBI · UNIVERSITY OF CHICAGO · PI BISGAARD, HANS, OBER, CAROLE · 2015 to 2018
$3.2M
Dissecting the Genetic Architecture of Airway HyperresponsivenessR01HL113395 · NHLBI · UNIVERSITY OF CHICAGO · PI THOMPSON, EMMA E · 2014 to 2018
$2.0M
NCATS NIH HHS UL1 TR000427NCATS NIH HHS UL1 TR002373NHLBI NIH HHS P01 HL070831NHLBI NIH HHS R01 HL113395NHLBI NIH HHS R01 HL129735NIAID NIH HHS U19 AI095230
6 · The paper itself

Abstract

Background: The changes that occur during puberty have been implicated in susceptibility to a wide range of diseases later in life, many of which are characterized by sex-specific differences in prevalence. Both genetic and environmental factors have been associated with the onset or delay of puberty, and recent evidence has suggested a role for epigenetic changes in the initiation of puberty as well. Objective: To identify global DNA methylation changes that arise across the window of puberty in girls and boys. Methods: Genome-wide DNA methylation levels were measured using the Infinium 450K array. We focused our studies on peripheral blood mononuclear cells (PBMCs) from 30 girls and 25 boys pre- and post-puberty (8 and 14 years, respectively), in whom puberty status was confirmed by Tanner staging. Results: Our study revealed 347 differentially methylated probes (DMPs) in females and 50 DMPs in males between the ages of 8 and 14 years (FDR 5%). The female DMPs were in or near 312 unique genes, which were over-represented for having high affinity estrogen response elements (permutation Conclusion: Epigenetic changes spanning the window of puberty in females may be responsive to or modify hormonal changes that occur during this time and potentially contribute to sex-specific differences in immune-mediated and endocrine diseases later in life.

Indexed as

DNA MethylationGene Regulatory NetworksAdolescentChildEndocrine SystemEpigenesis, GeneticEstrogensFemaleGene Expression RegulationGenome-Wide Association StudyHumansImmunityLeukocytes, MononuclearMaleOligonucleotide Array Sequence AnalysisPubertyEstrogensAndrogenDifferential methylationEpigeneticsEstrogenImmune responsePuberty

Identifiers

PMID29760811
PMCPMC5941468
OpenAlexW2800279612

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.