Evidence map›Paper›PMID 29760453›Full record

ArticleNature communications2018

Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.

Tadeusz Krassowski, Aisling Y Coughlan, Xing-Xing Shen, Xiaofan Zhou, Jacek Kominek, Dana A Opulente, Robert Riley, Igor V Grigoriev, Nikunj Maheshwari, Denis C Shields and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Article
  2. Journal of fungi (Basel, Switzerland) · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Genomic Insights ofOpen forum infectious diseases · 2026
    Review
  9. Article
  10. Ancient origin and high diversity of zymocin-like killer toxins in the budding yeast subphylum.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Tadeusz KrassowskiConway Institute and School of Medicine, University College Dublin, Dublin 4, Ireland.
Aisling Y CoughlanConway Institute and School of Medicine, University College Dublin, Dublin 4, Ireland.
Xing-Xing ShenDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, 37235, USA.ORCID http://orcid.org/0000-0001-5765-1419
Xiaofan ZhouDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, 37235, USA.
Jacek KominekLaboratory of Genetics, Genome Center of Wisconsin, J.F. Crow Institute for the Study of Evolution, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID http://orcid.org/0000-0002-1916-0122
Dana A OpulenteLaboratory of Genetics, Genome Center of Wisconsin, J.F. Crow Institute for the Study of Evolution, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Robert RileyUnited States Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Igor V GrigorievUnited States Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.ORCID http://orcid.org/0000-0002-3136-8903
Nikunj MaheshwariConway Institute and School of Medicine, University College Dublin, Dublin 4, Ireland.ORCID http://orcid.org/0000-0003-3785-3376
Denis C ShieldsConway Institute and School of Medicine, University College Dublin, Dublin 4, Ireland.
Cletus P KurtzmanU.S. Department of Agriculture, Mycotoxin Prevention and Applied Microbiology Research Unit, National Center for Agricultural Utilization Research, Agricultural Research Service, Peoria, IL, 61604, USA.
Chris Todd HittingerLaboratory of Genetics, Genome Center of Wisconsin, J.F. Crow Institute for the Study of Evolution, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID http://orcid.org/0000-0001-5088-7461
Antonis RokasDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, 37235, USA.ORCID http://orcid.org/0000-0002-7248-6551
Kenneth H WolfeConway Institute and School of Medicine, University College Dublin, Dublin 4, Ireland. kenneth.wolfe@ucd.ie.ORCID http://orcid.org/0000-0003-4992-4979

Funding

Midgut Transcriptome and Proteome Analyses: Non-model Anopheline Malaria VectorsR21AI105619 · NIAID · JOHNS HOPKINS UNIVERSITY · PI DINGLASAN, RHOEL DAVID RAMOS · 2014 to 2015
$454k
NIAID NIH HHS R21 AI105619Wellcome Trust
6 · The paper itself

Abstract

The genetic code used in nuclear genes is almost universal, but here we report that it changed three times in parallel during the evolution of budding yeasts. All three changes were reassignments of the codon CUG, which is translated as serine (in 2 yeast clades), alanine (1 clade), or the 'universal' leucine (2 clades). The newly discovered Ser2 clade is in the final stages of a genetic code transition. Most species in this clade have genes for both a novel tRNA

Indexed as

CodonGenetic CodeGenome, FungalAlanineEvolution, MolecularLeucineNucleic Acid ConformationPhylogenyProtein BiosynthesisRNA, FungalRNA, Transfer, AlaRNA, Transfer, LeuRNA, Transfer, SerSaccharomycetalesSelection, GeneticSerineAlanineCodonLeucineRNA, FungalRNA, Transfer, AlaRNA, Transfer, LeuRNA, Transfer, SerSerine

Identifiers

PMID29760453
PMCPMC5951914

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.