Evidence map›Paper›PMID 29760420›Full record

ArticleNature communications2018

Engineering modular intracellular protein sensor-actuator devices.

Velia Siciliano, Breanna DiAndreth, Blandine Monel, Jacob Beal, Jin Huh, Kiera L Clayton, Liliana Wroblewska, AnneMarie McKeon, Bruce D Walker, Ron Weiss

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Programmable nanobody circuits for cell selection.bioRxiv : the preprint server for biology · 2026
    Article
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  14. Article
  15. The evolution of synthetic receptor systems.Nature chemical biology · 2022
    Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Velia SicilianoDepartment of Synthetic and Systems Biology for Biomedicine, Istituto Italiano di Tecnologia, Via Morego 30, Genoa, 16163, Italy. velia.siciliano@iit.it.
Breanna DiAndrethDepartment of Biological Engineering, Synthetic Biology Center, Massachusetts Institute of Technology, 500 Technology Square, Cambridge, MA, 02139, USA.ORCID http://orcid.org/0000-0002-0302-6834
Blandine MonelRagon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard University, Cambridge, MA, 02139, USA.
Jacob BealRaytheon BBN Technologies, Cambridge, MA, 02138, USA.
Jin HuhDepartment of Biological Engineering, Synthetic Biology Center, Massachusetts Institute of Technology, 500 Technology Square, Cambridge, MA, 02139, USA.
Kiera L ClaytonRagon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard University, Cambridge, MA, 02139, USA.
Liliana WroblewskaPfizer, Cambridge, MA, 02139, USA.
AnneMarie McKeonRagon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard University, Cambridge, MA, 02139, USA.
Bruce D WalkerRagon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard University, Cambridge, MA, 02139, USA.ORCID http://orcid.org/0000-0001-6122-9245
Ron WeissDepartment of Biological Engineering, Synthetic Biology Center, Massachusetts Institute of Technology, 500 Technology Square, Cambridge, MA, 02139, USA. rweiss@mit.edu.
Howard Hughes Medical Institute · USMassachusetts Institute of Technology · USItalian Institute of Technology · ITPfizer (United States) · USRTX (United States) · US

Funding

MIT Center for Integrative Synthetic BiologyP50GM098792 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WEISS, RON · 2013 to 2017
$11.0M
RNA circuits for cell state determination in mammalian cells in vitro and in vivoR01CA207029 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WEISS, RON · 2016 to 2020
$3.0M
NCI NIH HHS R01 CA207029NIGMS NIH HHS P50 GM098792NIH HHS P50 GM098792
6 · The paper itself

Abstract

Understanding and reshaping cellular behaviors with synthetic gene networks requires the ability to sense and respond to changes in the intracellular environment. Intracellular proteins are involved in almost all cellular processes, and thus can provide important information about changes in cellular conditions such as infections, mutations, or disease states. Here we report the design of a modular platform for intrabody-based protein sensing-actuation devices with transcriptional output triggered by detection of intracellular proteins in mammalian cells. We demonstrate reporter activation response (fluorescence, apoptotic gene) to proteins involved in hepatitis C virus (HCV) infection, human immunodeficiency virus (HIV) infection, and Huntington's disease, and show sensor-based interference with HIV-1 downregulation of HLA-I in infected T cells. Our method provides a means to link varying cellular conditions with robust control of cellular behavior for scientific and therapeutic applications.

Indexed as

Biosensing TechniquesGene Regulatory NetworksAntibodiesApoptosisApoptosis Regulatory ProteinsBacterial ProteinsEndopeptidasesGenes, ReporterGenetic EngineeringHEK293 CellsHepacivirusHIV-1HLA AntigensHumansHuntingtin ProteinJurkat CellsAntibodiesApoptosis Regulatory ProteinsBacterial ProteinsEndopeptidasesHLA AntigensHTT protein, humanHuntingtin ProteinLuminescent ProteinsTEV proteaseyellow fluorescent protein, Bacteria

Identifiers

PMID29760420
PMCPMC5951936
OpenAlexW2804424677

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.