Evidence map›Paper›PMID 29760077›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Conformations of peptoids in nanosheets result from the interplay of backbone energetics and intermolecular interactions.

John R Edison, Ryan K Spencer, Glenn L Butterfoss, Benjamin C Hudson, Allon I Hochbaum, Anant K Paravastu, Ronald N Zuckermann, Stephen Whitelam

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Minimal Peptoid Dynamics Inform Self-Assembly Propensity.The journal of physical chemistry. B · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Atomic-level engineering and imaging of polypeptoid crystal lattices.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

John R EdisonMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Ryan K SpencerMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.ORCID 0000-0002-1043-3913
Glenn L ButterfossCenter for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, United Arab Emirates.
Benjamin C HudsonSchool of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332.
Allon I HochbaumDepartment of Chemical Engineering & Materials Science, University of California, Irvine, Irvine, CA 92697.
Anant K ParavastuSchool of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332.ORCID 0000-0001-7183-1942
Ronald N ZuckermannMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Stephen WhitelamMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720; swhitelam@lbl.gov.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The conformations adopted by the molecular constituents of a supramolecular assembly influence its large-scale order. At the same time, the interactions made in assemblies by molecules can influence their conformations. Here we study this interplay in extended flat nanosheets made from nonnatural sequence-specific peptoid polymers. Nanosheets exist because individual polymers can be linear and untwisted, by virtue of polymer backbone elements adopting alternating rotational states whose twists oppose and cancel. Using molecular dynamics and quantum mechanical simulations, together with experimental data, we explore the design space of flat nanostructures built from peptoids. We show that several sets of peptoid backbone conformations are consistent with their being linear, but the specific combination observed in experiment is determined by a combination of backbone energetics and the interactions made within the nanosheet. Our results provide a molecular model of the peptoid nanosheet consistent with all available experimental data and show that its structure results from a combination of intra- and intermolecular interactions.

Indexed as

Molecular Dynamics SimulationBiomimetic MaterialsNanostructuresPeptoidsPolymersProtein Structure, SecondaryPeptoidsPolymers2D supramolecular assemblybiomimetic sequence-specific polymerscis-amidepeptoid secondary structure

Identifiers

PMID29760077
PMCPMC5984518

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.