Evidence map›Paper›PMID 29758033›Full record

ArticlePloS one2018

Phylogenetic relationships, biofilm formation, motility, antibiotic resistance and extended virulence genotypes among Escherichia coli strains from women with community-onset primitive acute pyelonephritis.

Arianna Pompilio, Valentina Crocetta, Vincenzo Savini, Dezemona Petrelli, Marta Di Nicola, Silvia Bucco, Luigi Amoroso, Mario Bonomini, Giovanni Di Bonaventura

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  3. Analysis ofFrontiers in cellular and infection microbiology · 2024
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  6. Incidence of biofilms among the multidrug resistant E. coli, isolated from urinary tract infections in the Nilgiris district, South India.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
  7. Description of extraintestinal pathogenicIranian journal of microbiology · 2023
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  8. Correlation of biofilm formation, virulence factors, and phylogenetic groups amongJournal of research in medical sciences : the official journal of Isfahan University of Medical Sciences · 2023
    Review
  9. Article
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  13. Article
  14. Characterization ofInfection and drug resistance · 2021
    Article
  15. Biofilm Formation amongMicroorganisms · 2020
    Article
  16. Review
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Arianna PompilioDepartment of Medical, Oral, and Biotechnological Sciences, Laboratory of Clinical Microbiology, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.
Valentina CrocettaDepartment of Medical, Oral, and Biotechnological Sciences, Laboratory of Clinical Microbiology, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.
Vincenzo Savini"Spirito Santo" Hospital, Laboratory of Clinical Microbiology and Virology, Pescara, Italy.
Dezemona PetrelliSchool of Pharmacy, Microbiology Unit, University of Camerino, Camerino, Italy.
Marta Di NicolaDepartment of Medical, Oral, and Biotechnological Sciences, Laboratory of Clinical Microbiology, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.
Silvia BuccoDepartment of Medicine, Nephrology and Dialysis Unit, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.
Luigi AmorosoDepartment of Medicine, Nephrology and Dialysis Unit, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.
Mario BonominiDepartment of Medicine, Nephrology and Dialysis Unit, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.
Giovanni Di BonaventuraDepartment of Medical, Oral, and Biotechnological Sciences, Laboratory of Clinical Microbiology, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.ORCID 0000-0001-5850-2810
University of Chieti-Pescara · ITOspedale di Santo Spirito · ITUniversità di Camerino · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The present work set out to search for a virulence repertoire distinctive for Escherichia coli causing primitive acute pyelonephritis (APN). To this end, the virulence potential of 18 E. coli APN strains was genotypically and phenotypically assessed, comparatively with 19 strains causing recurrent cystitis (RC), and 16 clinically not significant (control, CO) strains. Most of the strains belong to phylogenetic group B1 (69.8%; p<0.01), and APN strains showed unique features, which are the presence of phylogroup A, and the absence of phylogroup B2 and non-typeable strains. Overall, the most dominant virulence factor genes (VFGs) were ecpA and fyuA (92.4 and 86.7%, respectively; p<0.05), and the mean number of VFGs was significantly higher in uropathogenic strains. Particularly, papAH and malX were exclusive for uropathogenic strains. APN and RC strains showed a significantly higher prevalence of fyuA, usp, and malX than of CO strains. Compared to RC strains, APN ones showed a higher prevalence of iha, but a lower prevalence of iroN, cnf1, and kpsMT-II. Hierarchical cluster analysis showed a higher proportion of two gene clusters (malX and usp, and fyuA and ecpA) were detected in the APN and RC groups than in CO, whereas iutA and iha clusters were detected more frequently in APN strains. The motility level did not differ among the study-groups and phylogroups considered, although a higher proportion of swarming strains was observed in APN strains. Antibiotic-resistance rates were generally low except for ampicillin (37.7%), and were not associated with specific study- or phylogenetic groups. APN and RC strains produced more biofilm than CO strains. In APN strains, iha was associated with higher biofilm biomass formation, whereas iroN and KpSMT-K1 were associated with a lower amount of biofilm biomass. Further work is needed to grasp the virulence and fitness mechanisms adopted by E. coli causing APN, and hence develop new therapeutic and prophylactic approaches.

Indexed as

AdolescentAdultBiofilmsCommunity-Acquired InfectionsDrug Resistance, MicrobialEscherichia coliEscherichia coli InfectionsFemaleGenes, BacterialGenotypeHumansMiddle AgedPhylogenyProspective StudiesPyelonephritisVirulence

Identifiers

PMID29758033
PMCPMC5951556
OpenAlexW2803482839

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.