Evidence map›Paper›PMID 29757624›Full record

ArticleBiochemistry2018

Steric Control of the Rate-Limiting Step of UDP-Galactopyranose Mutase.

Gustavo Pierdominici-Sottile, Rodrigo Cossio-Pérez, Isabel Da Fonseca, Karina Kizjakina, John J Tanner, Pablo Sobrado

Abstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Gustavo Pierdominici-SottileSci-prot. Departamento de Ciencia y Tecnología , Universidad Nacional de Quilmes , Bernal B1876BXD , Argentina.
Rodrigo Cossio-PérezSci-prot. Departamento de Ciencia y Tecnología , Universidad Nacional de Quilmes , Bernal B1876BXD , Argentina.
Isabel Da FonsecaDepartment of Biochemistry , Virginia Tech , Blacksburg , Virginia 24061 , United States.
Karina KizjakinaDepartment of Biochemistry , Virginia Tech , Blacksburg , Virginia 24061 , United States.
John J TannerDepartments of Biochemistry and Chemistry , University of Missouri-Columbia , Columbia , Missouri 65211 , United States.ORCID 0000-0001-8314-113X
Pablo SobradoDepartment of Biochemistry , Virginia Tech , Blacksburg , Virginia 24061 , United States.ORCID 0000-0003-1494-5382
Virginia Tech · USNational University of Quilmes · ARUniversity of Missouri · US

Funding

Mechanistic and structural studies of eukaryotic UDP-galactopyranose mutasesR01GM094469 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI SOBRADO, PABLO, TANNER, JOHN J · 2010 to 2019
$2.0M
NIGMS NIH HHS R01 GM094469
6 · The paper itself

Abstract

Galactose is an abundant monosaccharide found exclusively in mammals as galactopyranose (Gal p), the six-membered ring form of this sugar. In contrast, galactose appears in many pathogenic microorganisms as the five-membered ring form, galactofuranose (Gal f). Gal f biosynthesis begins with the conversion of UDP-Gal p to UDP-Gal f catalyzed by the flavoenzyme UDP-galactopyranose mutase (UGM). Because UGM is essential for the survival and proliferation of several pathogens, there is interest in understanding the catalytic mechanism to aid inhibitor development. Herein, we have used kinetic measurements and molecular dynamics simulations to explore the features of UGM that control the rate-limiting step (RLS). We show that UGM from the pathogenic fungus Aspergillus fumigatus also catalyzes the isomerization of UDP-arabinopyranose (UDP-Ara p), which differs from UDP-Gal p by lacking a -CH

Indexed as

AspergillosisAspergillus fumigatusCrystallography, X-RayGalactoseHumansIntramolecular TransferasesIsomerismKineticsModels, MolecularProtein ConformationSubstrate SpecificityUridine DiphosphateUridine Diphosphate GalactoseUridine Diphosphate SugarsGalactoseIntramolecular TransferasesUDP-galactopyranose mutaseUridine Diphosphateuridine diphosphate arabinoseuridine diphosphate galactofuranoseUridine Diphosphate GalactoseUridine Diphosphate Sugars

Identifiers

PMID29757624
PMCPMC6492245
OpenAlexW2800633013

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.