Evidence map›Paper›PMID 29755653›Full record

ArticleOncotarget2018

TumorNext-Lynch-MMR: a comprehensive next generation sequencing assay for the detection of germline and somatic mutations in genes associated with mismatch repair deficiency and Lynch syndrome.

Phillip N Gray, Pei Tsai, Daniel Chen, Sitao Wu, Jayne Hoo, Wenbo Mu, Bing Li, Huy Vuong, Hsiao-Mei Lu, Navanjot Batth and 19 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Lynch Syndrome: Its Impact on Urothelial Carcinoma.International journal of molecular sciences · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Comprehensive Paired Tumor/Germline Testing for Lynch Syndrome: Bringing Resolution to the Diagnostic Process.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2019
    Article
  13. Article
  14. A practical guide to biomarkers for the evaluation of colorectal cancer.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 9 institutions in 1 country.

Phillip N GrayAdvanced Genomic Services, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Pei TsaiAdvanced Genomic Services, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Daniel ChenClinical Diagnostics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Sitao WuBioinformatics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Jayne HooBioinformatics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Wenbo MuBioinformatics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Bing LiBioinformatics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Huy VuongBioinformatics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Hsiao-Mei LuBioinformatics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Navanjot BatthClinical Diagnostics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Sara WillettAdvanced Genomic Services, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Lisa UyedaClinical Diagnostics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Swati ShahClinical Diagnostics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Chia-Ling GauClinical Diagnostics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Monalyn UmaliClinical Diagnostics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Carin EspenschiedClinical Diagnostics Department, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Mike JanicekCancer Genetic Risk Assessment Program, Arizona Oncology, Scottsdale, AZ 85258, USA.
Sandra BrownCancer Genetics Program, Saint Joseph of Orange, Orange, CA 92868, USA.
David MargilethCancer Genetics Program, Saint Joseph of Orange, Orange, CA 92868, USA.
Lavinia DobreaOncology Research and Biospecimen Program, Saint Joseph of Orange, Orange, CA 92868, USA.
Lawrence WagmanThe Center for Cancer Prevention and Treatment, Saint Joseph of Orange, Orange, CA 92868, USA.
Huma RanaDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, MA 02461, USA.
Michael J HallDepartment of Clinical Genetics, Fox Chase Cancer Center, Philadelphia PA 19111, USA.
Theodora RossDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Jonathan TerdimanDepartment of Medicine - Gastroenterology, University of California San Francisco, San Francisco, CA 94115, USA.
Carey CullinaneDepartment of Pathology, Long Beach Memorial Medical Center, Long Beach, CA 90801, USA.
Savita RiesDepartment of Pathology, Long Beach Memorial Medical Center, Long Beach, CA 90801, USA.
Ellen TottenAdvocate Medical Group, Park Ridge, Illinois 60068, USA.
Aaron M ElliottAdvanced Genomic Services, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Ambry Genetics (United States) · USCancer Genetics (United States) · USLong Beach Memorial Medical Center · USAdvocate Health Care · USArizona Oncology · USDana-Farber Cancer Institute · USFox Chase Cancer Center · USThe University of Texas Southwestern Medical Center · USUniversity of California, San Francisco · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The current algorithm for Lynch syndrome diagnosis is highly complex with multiple steps which can result in an extended time to diagnosis while depleting precious tumor specimens. Here we describe the analytical validation of a custom probe-based NGS tumor panel, TumorNext-Lynch-MMR, which generates a comprehensive genetic profile of both germline and somatic mutations that can accelerate and streamline the time to diagnosis and preserve specimen. TumorNext-Lynch-MMR can detect single nucleotide variants, small insertions and deletions in 39 genes that are frequently mutated in Lynch syndrome and colorectal cancer. Moreover, the panel provides microsatellite instability status and detects loss of heterozygosity in the five Lynch genes;

Indexed as

colorectal cancerLynch syndromemicrosatellite instabilitymismatch repair deficiencynext generation sequencing

Identifiers

PMID29755653
PMCPMC5945525
OpenAlexW2803085510

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.