ArticleFrontiers in plant science2018
Haplotype-Based Genotyping in Polyploids.
Article in Frontiers in plant science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
46 citing papers in PubMed, 88 citations in OpenAlex.
- Construction of an introgression line population for cultivated peanut (Frontiers in plant science · 2026Article
- Population-specific pangenome unveils a third FAD2 gene and solves the peanut mid-oleic fatty acid mystery.Nature communications · 2025Article
- Genetic mapping of time-to-maturity trait in hypogaea x fastigiata peanut background reveals a significant effect of pod-related and flowering pattern.BMC plant biology · 2025Article
- Aerial imagery and Segment Anything Model for architectural trait phenotyping to support genetic analysis in peanut breeding.Plant phenomics (Washington, D.C.) · 2025Article
- Integrative genomics and genetics from evolutionary insights to precision breeding in peanuts (Arachis Hypogaea L.).Functional & integrative genomics · 2025Review
- Niche expansion of polyploid cytotypes shaped the phylogeographical history of the Salix retusa complex in the European Alpine System.Annals of botany · 2025Article
- Genome-wide association analysis in peanut accessions uncovers the genetic basis regulating oil and fatty acid variation.BMC plant biology · 2025Article
- Genetic structure of Ethiopian finger millet landraces and genome-wide association mapping for agronomic and nutritional traits.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
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- Genetic characterization and mapping of the shell-strength trait in peanut.BMC plant biology · 2024Article
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- Genetic diversity, disease resistance, and environmental adaptation of Arachis duranensis L.: New insights from landscape genomics.PloS one · 2024Article
- Understanding the impacts of drought on peanutsFrontiers in genetics · 2024Review
- The groundnut improvement network for Africa (GINA) germplasm collection: a unique genetic resource for breeding and gene discovery.G3 (Bethesda, Md.) · 2023Article
- Demographic history inference and the polyploid continuum.Genetics · 2023Article
- Genome-wide association studies reveal novel loci for resistance to groundnut rosette disease in the African core groundnut collection.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Insights into the Taxonomically Challenging Hexaploid Alpine Shrub Willows ofPlants (Basel, Switzerland) · 2023Article
- Development and application of a computable genotype model in the GA4GH Variation Representation Specification.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2023Article
- Sustaining yield and nutritional quality of peanuts in harsh environments: Physiological and molecular basis of drought and heat stress tolerance.Frontiers in genetics · 2023Review
- CAPG: comprehensive allopolyploid genotyper.Bioinformatics (Oxford, England) · 2023Article
Corrections and comments
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Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Accurate identification of polymorphisms from sequence data is crucial to unlocking the potential of high throughput sequencing for genomics. Single nucleotide polymorphisms (SNPs) are difficult to accurately identify in polyploid crops due to the duplicative nature of polyploid genomes leading to low confidence in the true alignment of short reads. Implementing a haplotype-based method in contrasting subgenome-specific sequences leads to higher accuracy of SNP identification in polyploids. To test this method, a large-scale 48K SNP array (Axiom Arachis2) was developed for
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.