Evidence map›Paper›PMID 29754821›Full record

ArticleCell2018

A Post-Transcriptional Feedback Mechanism for Noise Suppression and Fate Stabilization.

Maike M K Hansen, Winnie Y Wen, Elena Ingerman, Brandon S Razooky, Cassandra E Thompson, Roy D Dar, Charles W Chin, Michael L Simpson, Leor S Weinberger

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 97 citations in OpenAlex.

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  20. The life and death of RNA across temperatures.Computational and structural biotechnology journal · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Maike M K HansenGladstone|UCSF Center for Cell Circuitry, Gladstone Institutes, San Francisco, CA 94158, USA.
Winnie Y WenGladstone|UCSF Center for Cell Circuitry, Gladstone Institutes, San Francisco, CA 94158, USA; Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA 92093, USA.
Elena IngermanGladstone|UCSF Center for Cell Circuitry, Gladstone Institutes, San Francisco, CA 94158, USA.
Brandon S RazookyGladstone|UCSF Center for Cell Circuitry, Gladstone Institutes, San Francisco, CA 94158, USA.
Cassandra E ThompsonGladstone|UCSF Center for Cell Circuitry, Gladstone Institutes, San Francisco, CA 94158, USA.
Roy D DarGladstone|UCSF Center for Cell Circuitry, Gladstone Institutes, San Francisco, CA 94158, USA.
Charles W ChinCenter for Nanophase Materials Science, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; The Bredesen Center, University of Tennessee, Knoxville, TN 37996, USA.
Michael L SimpsonCenter for Nanophase Materials Science, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; The Bredesen Center, University of Tennessee, Knoxville, TN 37996, USA.
Leor S WeinbergerGladstone|UCSF Center for Cell Circuitry, Gladstone Institutes, San Francisco, CA 94158, USA; Department of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158, USA; Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94158, USA. Electronic address: leor.weinberger@gladstone.ucsf.edu.
Gladstone Institutes · USUniversity of Tennessee at Knoxville · USUniversity of California, San Diego · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MALLORY O JOHNSON · 1988 to 2026
$93.6M
VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI David Mitchell Smith · 1994 to 2026
$78.4M
Molecular Virology and Systems Biology Screening CoreP01AI090935 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI REED, JOHN C · 2010 to 2014
$20.4M
Evolvable 'Resistance-Proof' TherapiesDP1DE024408 · NIDCR · J. DAVID GLADSTONE INSTITUTES · PI WEINBERGER, LEOR S · 2013 to 2017
$4.8M
Developing Transmissible Antivirals by Exploiting Gene-Expression CircuitryDP2OD006677 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WEINBERGER, LEOR S · 2009 to 2009
$2.3M
Stochastic Gene Expression in Retroviral LatencyR01AI109593 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI WEINBERGER, LEOR S · 2014 to 2018
$2.2M
BD FACSAria II Flow CytometerS10RR028962 · NCRR · J. DAVID GLADSTONE INSTITUTES · PI CAVROIS, MARIELLE · 2011 to 2011
$544k
Wide field-of-view Spinning Disk Confocal with Photoactivation and PhotobleachingS10OD017993 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI THORN, KURT · 2015 to 2015
$274k
NCRR NIH HHS S10 RR028962NIAID NIH HHS P01 AI090935NIAID NIH HHS P30 AI027763NIAID NIH HHS P30 AI036214NIAID NIH HHS R01 AI109593NIDCR NIH HHS DP1 DE024408NIH HHS DP2 OD006677NIH HHS S10 OD017993
6 · The paper itself

Abstract

Diverse biological systems utilize fluctuations ("noise") in gene expression to drive lineage-commitment decisions. However, once a commitment is made, noise becomes detrimental to reliable function, and the mechanisms enabling post-commitment noise suppression are unclear. Here, we find that architectural constraints on noise suppression are overcome to stabilize fate commitment. Using single-molecule and time-lapse imaging, we find that-after a noise-driven event-human immunodeficiency virus (HIV) strongly attenuates expression noise through a non-transcriptional negative-feedback circuit. Feedback is established through a serial cascade of post-transcriptional splicing, whereby proteins generated from spliced mRNAs auto-deplete their own precursor unspliced mRNAs. Strikingly, this auto-depletion circuitry minimizes noise to stabilize HIV's commitment decision, and a noise-suppression molecule promotes stabilization. This feedback mechanism for noise suppression suggests a functional role for delayed splicing in other systems and may represent a generalizable architecture of diverse homeostatic signaling circuits.

Indexed as

Feedback, PhysiologicalGreen Fluorescent ProteinsHEK293 CellsHIV-1HumansJurkat CellsModels, BiologicalRNA, MessengerRNA PrecursorsRNA Processing, Post-TranscriptionalRNA Splicingtat Gene Products, Human Immunodeficiency VirusTime-Lapse ImagingGreen Fluorescent ProteinsRNA, MessengerRNA Precursorstat Gene Products, Human Immunodeficiency Virusfate selectionfeedbackHIVpost-transcriptional splicingpulse chasesingle-cell imagingsingle-molecule imagingstochastic noisetranscriptional fluctuationsvirus

Identifiers

PMID29754821
PMCPMC6044448
OpenAlexW2802953888

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.