Evidence map›Paper›PMID 29754218›Full record

ArticleCancer immunology, immunotherapy : CII2018

Genetic variants in the HLA class II region associated with risk of cutaneous squamous cell carcinoma.

Wei Wang, Hanna M Ollila, Alice S Whittemore, Shadmehr Demehri, Nilah M Ioannidis, Eric Jorgenson, Emmanuel Mignot, Maryam M Asgari

Abstract read
In one paragraph

Article in Cancer immunology, immunotherapy : CII, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. The Role of the Immune System in Cutaneous Squamous Cell Carcinoma.International journal of molecular sciences · 2019
    Review
  7. Keratinocyte Carcinomas: Current Concepts and Future Research Priorities.Clinical cancer research : an official journal of the American Association for Cancer Research · 2019
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Wei WangDepartment of Health Research and Policy, Stanford University School of Medicine, Stanford, CA, USA.
Hanna M OllilaDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Alice S WhittemoreDepartment of Health Research and Policy, Stanford University School of Medicine, Stanford, CA, USA.
Shadmehr DemehriDepartment of Dermatology, Massachusetts General Hospital, 50 Staniford Street, Suite 270, 02114, Boston, MA, USA.
Nilah M IoannidisDepartment of Health Research and Policy, Stanford University School of Medicine, Stanford, CA, USA.
Eric JorgensonDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.
Emmanuel MignotDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Maryam M AsgariDepartment of Dermatology, Massachusetts General Hospital, 50 Staniford Street, Suite 270, 02114, Boston, MA, USA. masgari@partners.org.ORCID http://orcid.org/0000-0003-1582-3475
Stanford University · USHarvard University · USKaiser Permanente · USMassachusetts General Hospital · US

Funding

Patient-oriented research and mentoring program in dermatologic diseasesK24AR069760 · NIAMS · UNIVERSITY OF COLORADO DENVER · PI ASGARI, MARYAM MANDANA · 2017 to 2025
$1.9M
Genome-wide association study of cutaneous squamous cell carincomaR01CA166672 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI ASGARI, MARYAM MANDANA · 2013 to 2016
$1.3M
NCI NIH HHS R01 CA166672NCI NIH HHS R01CA166672NIAMS NIH HHS K24 AR069760
6 · The paper itself

Abstract

backgroundThe immune system has been implicated in the pathophysiology of cutaneous squamous cell carcinoma (cSCC) as evidenced by the substantially increased risk of cSCC in immunosuppressed individuals. Associations between cSCC risk and single nucleotide polymorphisms (SNPs) in the HLA region have been identified by genome-wide association studies (GWAS). The translation of the associated HLA SNPs to structural amino acids changes in HLA molecules has not been previously elucidated.

methodsUsing data from a GWAS that included 7238 cSCC cases and 56,961 controls of non-Hispanic white ancestry, we imputed classical alleles and corresponding amino acid changes in HLA genes. Logistic regression models were used to examine associations between cSCC risk and genotyped or imputed SNPs, classical HLA alleles, and amino acid changes.

resultsAmong the genotyped SNPs, cSCC risk was associated with rs28535317 (OR = 1.20, p = 9.88 × 10

conclusionsAssociations with specific HLA-DR and -DQ alleles are likely to explain previously observed GWAS signals in the HLA region associated with cSCC risk.

Indexed as

Genes, MHC Class IIPolymorphism, Single NucleotideCarcinoma, Squamous CellGenome-Wide Association StudyGenotypeHumansRisk FactorsSkin NeoplasmsGeneticsGenome-wide association studyHLAImmunologySkin cancer

Identifiers

PMID29754218
PMCPMC7081741
OpenAlexW2802292513

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.