Evidence map›Paper›PMID 29751738›Full record

ArticleBMC plant biology2018

Transcriptomic and metabolomic analyses reveal that bacteria promote plant defense during infection of soybean cyst nematode in soybean.

Wenshu Kang, Xiaofeng Zhu, Yuanyuan Wang, Lijie Chen, Yuxi Duan

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
22.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 124 citations in OpenAlex.

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  20. RNA-Seq of Cyst Nematode Infestation of Potato (Plants (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Wenshu KangNematology Institute of Northern China, Shenyang Agricultural University, No.120 Dongling Road, Shenyang, 110866, China.
Xiaofeng ZhuNematology Institute of Northern China, Shenyang Agricultural University, No.120 Dongling Road, Shenyang, 110866, China.
Yuanyuan WangInstitute of Biotechnology, Shenyang Agricultural University, No.120 Dongling Road, Shenyang, 110866, China.
Lijie ChenNematology Institute of Northern China, Shenyang Agricultural University, No.120 Dongling Road, Shenyang, 110866, China.
Yuxi DuanNematology Institute of Northern China, Shenyang Agricultural University, No.120 Dongling Road, Shenyang, 110866, China. duanyx6407@163.com.ORCID http://orcid.org/0000-0002-6287-6812
Shenyang Agricultural University · CN

Funding

China Agriculture Research System CARS-04-PS13National Nature Science Fund Key Projects 313300630
6 · The paper itself

Abstract

backgroundSoybean cyst nematode (SCN) is the most devastating pathogen of soybean. Our previous study showed that the plant growth-promoting rhizobacterium Bacillus simplex strain Sneb545 promotes soybean resistance to SCN. Here, we conducted a combined metabolomic and transcriptomic analysis to gain information regarding the biological mechanism of defence enhancement against SCN in Sneb545-treated soybean. To this end, we compared the transcriptome and metabolome of Sneb545-treated and non-treated soybeans under SCN infection.

resultsTranscriptomic analysis showed that 6792 gene transcripts were common in Sneb545-treated and non-treated soybeans. However, Sneb545-treated soybeans showed a higher concentration of various nematicidal metabolites, including 4-vinylphenol, methionine, piperine, and palmitic acid, than non-treated soybeans under SCN infection.

conclusionsOverall, our results validated and expanded the existing models regarding the co-regulation of gene expression and metabolites in plants, indicating the advantage of integrated system-oriented analysis.

Indexed as

Plant ImmunityTylenchoideaAnimalsBacillusGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantGlycine maxMetabolomicsPlant DiseasesPlant RootsReal-Time Polymerase Chain ReactionSequence Analysis, DNABacillus simplex strain Sneb545MetabolomeNematicidal metabolitesSoybeanSoybean cyst nematodeTranscriptome

Identifiers

PMID29751738
PMCPMC5948838
OpenAlexW2801547704

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.