Evidence map›Paper›PMID 29749603›Full record

ReviewFEBS letters2018

Structural biology data archiving - where we are and what lies ahead.

Gerard J Kleywegt, Sameer Velankar, Ardan Patwardhan

Abstract readReview
In one paragraph

Review in FEBS letters, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Reporting on the future of integrative structural biology ORAU workshop.Frontiers in bioscience (Landmark edition) · 2020
    Article
  2. Article
  3. Reducing cryoEM file storage using lossy image formats.Journal of structural biology · 2019
    Article
  4. Why Study the History of Neuroscience?Frontiers in behavioral neuroscience · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Gerard J KleywegtEuropean Molecular Biology Laboratory (EMBL), European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.ORCID 0000-0002-4670-0331
Sameer VelankarEuropean Molecular Biology Laboratory (EMBL), European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.
Ardan PatwardhanEuropean Molecular Biology Laboratory (EMBL), European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.

Funding

Unified Data Resource for Large Complexes Determined by Cryo-Electron MicroscopyR01GM079429 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH · 2007 to 2021
$11.6M
Biotechnology and Biological Sciences Research Council BB/G022577/1Medical Research Council MR/L007835/1Medical Research Council MR/P019544/1NIGMS NIH HHS R01 GM079429Wellcome Trust
6 · The paper itself

Abstract

For almost 50 years, structural biology has endeavoured to conserve and share its experimental data and their interpretations (usually, atomistic models) through global public archives such as the Protein Data Bank, Electron Microscopy Data Bank and Biological Magnetic Resonance Data Bank (BMRB). These archives are treasure troves of freely accessible data that document our quest for molecular or atomic understanding of biological function and processes in health and disease. They have prepared the field to tackle new archiving challenges as more and more (combinations of) techniques are being utilized to elucidate structure at ever increasing length scales. Furthermore, the field has made substantial efforts to develop validation methods that help users to assess the reliability of structures and to identify the most appropriate data for their needs. In this Review, we present an overview of public data archives in structural biology and discuss the importance of validation for users and producers of structural data. Finally, we sketch our efforts to integrate structural data with bioimaging data and with other sources of biological data. This will make relevant structural information available and more easily discoverable for a wide range of scientists.

Indexed as

Crystallography, X-RayDatabases, ProteinData CurationModels, MolecularProtein ConformationProteinsProteinsbioimagingdata archivingstructural biology

Identifiers

PMID29749603
PMCPMC6019198

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.