Evidence map›Paper›PMID 29747566›Full record

ArticleBMC genomics2018

Analysis of the canid Y-chromosome phylogeny using short-read sequencing data reveals the presence of distinct haplogroups among Neolithic European dogs.

Matthew T Oetjens, Axel Martin, Krishna R Veeramah, Jeffrey M Kidd

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. A legacy of genetic entanglement with wolves shapes modern dogs.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Review
  3. Inferences about the population history ofEcology and evolution · 2024
    Article
  4. Article
  5. Review
  6. Article
  7. A novelLife science alliance · 2021
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Matthew T OetjensDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, USA.
Axel MartinDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, USA.
Krishna R VeeramahDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, New York, USA.
Jeffrey M KiddDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, USA. jmkidd@umich.edu.ORCID http://orcid.org/0000-0002-9631-1465
University of Michigan · USStony Brook University · US

Funding

Comprehensive Characterization of Canine Genomic Structural DiversityR01GM103961 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BOYKO, ADAM R, KIDD, JEFFREY M · 2013 to 2016
$986k
National Institute of General Medical Sciences R01GM103961NIGMS NIH HHS R01 GM103961
6 · The paper itself

Abstract

backgroundMost genetic analyses of ancient and modern dogs have focused on variation in the autosomes or on the mitochondria. Mitochondrial DNA is more easily obtained from ancient samples than nuclear DNA and mitochondrial analyses have revealed important insights into the evolutionary history of canids. Utilizing a recently published dog Y-chromosome reference, we analyzed Y-chromosome sequence across a diverse collection of canids and determined the Y haplogroup of three ancient European dogs.

resultsWe identified 1121 biallelic Y-chromosome SNVs using whole-genome sequences from 118 canids and defined variants diagnostic to distinct dog Y haplogroups. Similar to that of the mitochondria and previous more limited studies of Y diversity, we observe several deep splits in the Y-chromosome tree which may be the result of retained Y-chromosome diversity which predates dog domestication or post-domestication admixture with wolves. We find that Y-chromosomes from three ancient European dogs (4700-7000 years old) belong to distinct clades.

conclusionsWe estimate that the time to the most recent comment ancestor of dog Y haplogroups is 68-151 thousand years ago. Analysis of three Y-chromosomes from the Neolithic confirms long stranding population structure among European dogs.

Indexed as

Evolution, MolecularHaplotypesPhylogenyY ChromosomeAnimalsCoyotesDNA, MitochondrialDogsGenetic VariationGenomeMaleSequence Analysis, DNAWolvesDNA, MitochondrialAncient dogCanidY-chromosome haplogroups

Identifiers

PMID29747566
PMCPMC5946424
OpenAlexW2803542503

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.