Evidence map›Paper›PMID 29746834›Full record

ArticleCell host & microbe2018

Characterization of BK Polyomaviruses from Kidney Transplant Recipients Suggests a Role for APOBEC3 in Driving In-Host Virus Evolution.

Alberto Peretti, Eileen M Geoghegan, Diana V Pastrana, Sigrun Smola, Pascal Feld, Marlies Sauter, Stefan Lohse, Mayur Ramesh, Efrem S Lim, David Wang and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell host & microbe, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 81 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 2 countries.

Alberto PerettiCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Eileen M GeogheganCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Diana V PastranaCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Sigrun SmolaInstitute of Virology, Saarland University, Homburg/Saar 66421, Germany.
Pascal FeldInstitute of Virology, Saarland University, Homburg/Saar 66421, Germany.
Marlies SauterInstitute of Virology, Saarland University, Homburg/Saar 66421, Germany.
Stefan LohseInstitute of Virology, Saarland University, Homburg/Saar 66421, Germany.
Mayur RameshDivision of Infectious Diseases, Henry Ford Hospital, Detroit, MI 48202 USA.
Efrem S LimDepartments of Molecular Microbiology and Pathology & Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
David WangDepartments of Molecular Microbiology and Pathology & Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Cinzia BorgognaVirology Unit, Department of Translational Medicine, Novara Medical School, Novara 28100, Italy.
Peter C FitzGeraldCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Valery BliskovskyCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Gabriel J StarrettDepartment of Biochemistry, Molecular Biology and Biophysics, Masonic Cancer Center, Institute for Molecular Virology, University of Minnesota, Minneapolis, MN 55455, USA.
Emily K LawDepartment of Biochemistry, Molecular Biology and Biophysics, Masonic Cancer Center, Institute for Molecular Virology, University of Minnesota, Minneapolis, MN 55455, USA; Howard Hughes Medical Institute, University of Minnesota, Minneapolis, MN 55455, USA.
Reuben S HarrisDepartment of Biochemistry, Molecular Biology and Biophysics, Masonic Cancer Center, Institute for Molecular Virology, University of Minnesota, Minneapolis, MN 55455, USA; Howard Hughes Medical Institute, University of Minnesota, Minneapolis, MN 55455, USA.
J Keith KillianCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Jack ZhuCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Marbin PinedaCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Paul S MeltzerCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Renzo BoldoriniPathology Unit, Department of Health Sciences, Novara Medical School, Novara 28100, Italy.
Marisa GariglioVirology Unit, Department of Translational Medicine, Novara Medical School, Novara 28100, Italy.
Christopher B BuckCenter for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address: buckc@mail.nih.gov.
National Institutes of Health · USSaarland University · DEUniversity of Minnesota · USWashington University in St. Louis · USHenry Ford Hospital · US

Funding

Molecular biology of human polyomavirusesZIABC011090 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BUCK, CHRISTOPHER · 2009 to 2025
$9.3M
BKV and JCV vaccine developmentZIABC011460 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BUCK, CHRISTOPHER · 2012 to 2025
$7.8M
Intramural NIH HHS ZIA BC011460
6 · The paper itself

Abstract

BK polyomavirus (BKV) frequently causes nephropathy (BKVN) in kidney transplant recipients (KTRs). BKV has also been implicated in the etiology of bladder and kidney cancers. We characterized BKV variants from two KTRs who developed BKVN followed by renal carcinoma. Both patients showed a swarm of BKV sequence variants encoding non-silent mutations in surface loops of the viral major capsid protein. The temporal appearance and disappearance of these mutations highlights the intra-patient evolution of BKV. Some of the observed mutations conferred resistance to antibody-mediated neutralization. The mutations also modified the spectrum of receptor glycans engaged by BKV during host cell entry. Intriguingly, all observed mutations were consistent with DNA damage caused by antiviral APOBEC3 cytosine deaminases. Moreover, APOBEC3 expression was evident upon immunohistochemical analysis of renal biopsies from KTRs. These results provide a snapshot of in-host BKV evolution and suggest that APOBEC3 may drive BKV mutagenesis in vivo.

Indexed as

Kidney TransplantationAdultAmino Acid SubstitutionAnimalsAntibodies, NeutralizingAntibodies, ViralAPOBEC DeaminasesBK VirusCapsid ProteinsCell LineChromosome MappingCytidine DeaminaseCytosine DeaminaseDNA DamageDNA, ViralFemaleAntibodies, NeutralizingAntibodies, ViralAPOBEC3 proteins, humanAPOBEC DeaminasesCapsid ProteinsCytidine DeaminaseCytosine DeaminaseDNA, ViralVP1 protein, polyomavirusAPOBECAPOBEC3BKPyVbladdercarcinomahuman polyomavirusJCPyVJCVurothelial

Identifiers

PMID29746834
PMCPMC5953553
OpenAlexW2801241116

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.