Evidence map›Paper›PMID 29746670›Full record

ArticleNucleic acids research2018

Dicer cleaves 5'-extended microRNA precursors originating from RNA polymerase II transcription start sites.

Peike Sheng, Christopher Fields, Kelsey Aadland, Tianqi Wei, Oralia Kolaczkowski, Tongjun Gu, Bryan Kolaczkowski, Mingyi Xie

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 56 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Peike ShengDepartment of Biochemistry and Molecular Biology.
Christopher FieldsDepartment of Biochemistry and Molecular Biology.
Kelsey AadlandDepartment of Microbiology & Cell Science, Institute of Food and Agricultural Sciences.
Tianqi WeiDepartment of Biochemistry and Molecular Biology.
Oralia KolaczkowskiDepartment of Microbiology & Cell Science, Institute of Food and Agricultural Sciences.
Tongjun GuInterdisciplinary Center for Biotechnology Research.
Bryan KolaczkowskiDepartment of Microbiology & Cell Science, Institute of Food and Agricultural Sciences.
Mingyi XieDepartment of Biochemistry and Molecular Biology.
Institute of Food Science and Technology · CNUniversity of Florida Health · USUF Health Cancer CenterUniversity of Florida · US

Funding

Noncanonical microRNA biogenesis and function in a gamma herpesvirus and mammalsR00CA190886 · NCI · UNIVERSITY OF FLORIDA · PI XIE, MINGYI · 2016 to 2018
$739k
NCI NIH HHS R00 CA190886
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are approximately 22 nucleotide (nt) long and play important roles in post-transcriptional regulation in both plants and animals. In animals, precursor (pre-) miRNAs are ∼70 nt hairpins produced by Drosha cleavage of long primary (pri-) miRNAs in the nucleus. Exportin-5 (XPO5) transports pre-miRNAs into the cytoplasm for Dicer processing. Alternatively, pre-miRNAs containing a 5' 7-methylguanine (m7G-) cap can be generated independently of Drosha and XPO5. Here we identify a class of m7G-capped pre-miRNAs with 5' extensions up to 39 nt long. The 5'-extended pre-miRNAs are transported by Exportin-1 (XPO1). Unexpectedly, a long 5' extension does not block Dicer processing. Rather, Dicer directly cleaves 5'-extended pre-miRNAs by recognizing its 3' end to produce mature 3p miRNA and extended 5p miRNA both in vivo and in vitro. The recognition of 5'-extended pre-miRNAs by the Dicer Platform-PAZ-Connector (PPC) domain can be traced back to ancestral animal Dicers, suggesting that this previously unrecognized Dicer reaction mode is evolutionarily conserved. Our work reveals additional genetic sources for small regulatory RNAs and substantiates Dicer's essential role in RNAi-based gene regulation.

Indexed as

Transcription Initiation SiteAnimalsCell LineExportin 1 ProteinGuanineKaryopherinsMiceMicroRNAsProtein DomainsReceptors, Cytoplasmic and NuclearRibonuclease IIIRNA CapsRNA CleavageRNA, Double-StrandedRNA InterferenceRNA Polymerase II7-methylguanineExportin 1 ProteinGuanineKaryopherinsMicroRNAsReceptors, Cytoplasmic and NuclearRibonuclease IIIRNA CapsRNA, Double-StrandedRNA Polymerase IIRNA Precursors

Identifiers

PMID29746670
PMCPMC6009592
OpenAlexW2802612616

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.