Evidence map›Paper›PMID 29746462›Full record

ArticlePLoS genetics2018

Conditional genetic screen in Physcomitrella patens reveals a novel microtubule depolymerizing-end-tracking protein.

Xinxin Ding, Leah M Pervere, Carl Bascom, Jeffrey P Bibeau, Sakshi Khurana, Allison M Butt, Robert G Orr, Patrick J Flaherty, Magdalena Bezanilla, Luis Vidali

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
5.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. The MossThe Plant cell · 2020
    Review
  6. Single Nucleotide Polymorphism Charting ofFrontiers in plant science · 2020
    Article
  7. Review
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Xinxin DingDepartment of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA.
Leah M PervereDepartment of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA.
Carl BascomPlant Biology Graduate Program, University of Massachusetts, Amherst, MA.
Jeffrey P BibeauDepartment of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA.
Sakshi KhuranaDepartment of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA.
Allison M ButtDepartment of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA.
Robert G OrrDepartment of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA.
Patrick J FlahertyBioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, MA.ORCID 0000-0001-6097-6572
Magdalena BezanillaDepartment of Biological Sciences, Dartmouth College, Hanover, NH.
Luis VidaliDepartment of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA.ORCID 0000-0002-5835-4587
Worcester Polytechnic Institute · USDartmouth College · US

Funding

Postdoctoral Training in the Radiation ScincesT32CA121940 · NCI · STANFORD UNIVERSITY · PI GRAVES, EDWARD E. · 2007 to 2018
$2.1M
NCI NIH HHS T32 CA121940
6 · The paper itself

Abstract

Our ability to identify genes that participate in cell growth and division is limited because their loss often leads to lethality. A solution to this is to isolate conditional mutants where the phenotype is visible under restrictive conditions. Here, we capitalize on the haploid growth-phase of the moss Physcomitrella patens to identify conditional loss-of-growth (CLoG) mutants with impaired growth at high temperature. We used whole-genome sequencing of pooled segregants to pinpoint the lesion of one of these mutants (clog1) and validated the identified mutation by rescuing the conditional phenotype by homologous recombination. We found that CLoG1 is a novel and ancient gene conserved in plants. At the restrictive temperature, clog1 plants have smaller cells but can complete cell division, indicating an important role of CLoG1 in cell growth, but not an essential role in cell division. Fluorescent protein fusions of CLoG1 indicate it is localized to microtubules with a bias towards depolymerizing microtubule ends. Silencing CLoG1 decreases microtubule dynamics, suggesting that CLoG1 plays a critical role in regulating microtubule dynamics. By discovering a novel gene critical for plant growth, our work demonstrates that P. patens is an excellent genetic system to study genes with a fundamental role in plant cell growth.

Indexed as

MutationBryopsidaChromosome MappingChromosomes, PlantCytoskeletonGene Expression Regulation, PlantMicrotubulesPhenotypePlant ProteinsRNA InterferenceWhole Genome SequencingPlant Proteins

Identifiers

PMID29746462
PMCPMC5944918
OpenAlexW2801180979

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.