Evidence map›Paper›PMID 29746298›Full record

Observational studyAIDS (London, England)2018

Perinatally acquired HIV infection accelerates epigenetic aging in South African adolescents.

Steve Horvath, Dan J Stein, Nicole Phillips, Sarah J Heany, Michael S Kobor, David T S Lin, Landon Myer, Heather J Zar, Andrew J Levine, Jacqueline Hoare

Open access · greenAbstract readObservational Study
In one paragraph

Observational study in AIDS (London, England), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 3 pooled it
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 3 syntheses or guidelines pooled it, 93 citations in OpenAlex.

  1. Pooled it
  2. Using Epigenetic Clocks to Characterize Biological Aging in Studies of Children and Childhood Exposures: a Systematic Review.Prevention science : the official journal of the Society for Prevention Research · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Steve HorvathDepartment of Human Genetics, David Geffen School of Medicine.
Dan J SteinMRC Unit on Risk & Resilience in Mental Disorders, Department of Psychiatry and Mental Health, University of Cape Town, J-Block, Groote Schuur Hospital, Observatory, Cape Town, South Africa.
Nicole PhillipsMRC Unit on Risk & Resilience in Mental Disorders, Department of Psychiatry and Mental Health, University of Cape Town, J-Block, Groote Schuur Hospital, Observatory, Cape Town, South Africa.
Sarah J HeanyMRC Unit on Risk & Resilience in Mental Disorders, Department of Psychiatry and Mental Health, University of Cape Town, J-Block, Groote Schuur Hospital, Observatory, Cape Town, South Africa.
Michael S KoborCentre for Molecular Medicine and Therapeutics, Department of Medical Genetics, British Columbia Children's Hospital Research Institute, Vancouver, British Columbia, Canada.
David T S LinCentre for Molecular Medicine and Therapeutics, Department of Medical Genetics, British Columbia Children's Hospital Research Institute, Vancouver, British Columbia, Canada.
Landon MyerCentre for Infectious Disease Epidemiology and Research.
Heather J ZarDepartment of Paediatrics and Child Health, Red Cross War Memorial Children's Hospital.
Andrew J LevineDepartment of Neurology, David Geffen School of Medicine at the University of California, Los Angeles, Los Angeles, California, USA.
Jacqueline HoareMRC Unit on Risk & Resilience in Mental Disorders, Department of Psychiatry and Mental Health, University of Cape Town, J-Block, Groote Schuur Hospital, Observatory, Cape Town, South Africa.
Groote Schuur Hospital · ZABritish Columbia Children's Hospital · CAUniversity of California, Los Angeles · USUniversity of Cape Town · ZASouth African Medical Research Council · ZA

Funding

Cape Town Adolescent Antiretroviral Cohort (CTAAC)R01HD074051 · NICHD · UNIVERSITY OF CAPE TOWN · PI ZAR, HEATHER JOY · 2012 to 2016
$3.0M
The epiGenetIcs Leads to aGe-relAted diseases (GILGA-mesh) NetworkU34AG051425 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HORVATH, STEVE · 2015 to 2017
$954k
Cross-tissue study of an accelerated epigenetic aging mechanism caused by HIVR21AG046954 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HORVATH, STEVE, LEVINE, ANDREW J · 2015 to 2016
$424k
Epigenetic and Psychosocial Drivers of NeuroHIV in HIV+ South African AdolescentsR21MH107327 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HOARE, JACQUELINE, LEVINE, ANDREW J · 2016 to 2017
$373k
NIA NIH HHS R21 AG046954NIA NIH HHS U34 AG051425NICHD NIH HHS R01 HD074051NIMH NIH HHS R21 MH107327
6 · The paper itself

Abstract

objectiveRecent studies demonstrate that infection with the HIV-1 is associated with accelerated aging effects in adults according to a highly accurate epigenetic biomarker of aging known as epigenetic clock. However, it is not yet known whether epigenetic age acceleration occurs as early as adolescence in perinatally HIV-infected (PHIV+) youth.

designObservational study of PHIV and HIV-uninfected adolescents enrolled in the Cape Town Adolescent Antiretroviral Cohort Study.

methodsThe Illumina EPIC array was used to generate blood DNA methylation data from 204 PHIV and 44 age-matched, uninfected (HIV-) adolescents aged 9-12 years old. The epigenetic clock software and method was used to estimate two measures of epigenetic age acceleration. Each participant completed a comprehensive neuropsychological test battery upon enrollment to Cape Town Adolescent Antiretroviral Cohort.

resultsHIV is associated with biologically older blood in PHIV+ adolescents according to both measures of epigenetic age acceleration. One of the measures, extrinsic epigenetic age acceleration, is negatively correlated with measures of cognitive functioning (executive functioning, working memory, processing speed).

conclusionOverall, our results indicate that epigenetic age acceleration in blood can be observed in PHIV+ adolescents and that these epigenetic changes accompany poorer cognitive functioning.

Indexed as

Epigenesis, GeneticAdolescentAgingChildComputational BiologyCross-Sectional StudiesDNA MethylationFemaleHIV InfectionsHumansMaleSequence Analysis, DNASouth Africa

Identifiers

PMID29746298
PMCPMC6026068
OpenAlexW2802853477

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.