Evidence map›Paper›PMID 29745816›Full record

ArticleConnective tissue research2018

The unique biomineralization transcriptome and proteome of Lytechinus variegatus teeth.

Keith Alvares, Caroline J DeHart, Paul M Thomas, Neil L Kelleher, Arthur Veis

Abstract read
In one paragraph

Article in Connective tissue research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Keith Alvaresa Feinberg School of Medicine, Department of Cell and Molecular Biology , Northwestern University , Chicago , IL , USA.
Caroline J DeHartb Proteomics Center of Excellence , Northwestern University , Evanston , IL , USA.
Paul M Thomasb Proteomics Center of Excellence , Northwestern University , Evanston , IL , USA.
Neil L Kelleherb Proteomics Center of Excellence , Northwestern University , Evanston , IL , USA.
Arthur Veisa Feinberg School of Medicine, Department of Cell and Molecular Biology , Northwestern University , Chicago , IL , USA.
Northwestern University · US

Funding

MATRIX COMPONENT INTERACTIONS IN BONE, DENTIN AND INVERTEBRATE MINERALR01DE001374 · NIDCR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ALVARES, KEITH, STOCK, STUART R · 1985 to 2013
$4.6M
NIDCR NIH HHS R01 DE001374
6 · The paper itself

Abstract

backgroundMatrix-regulated biomineralization involves the specific nucleation and growth of mineral phases within or upon preformed structured organic matrices. We hypothesized that there might be a general mechanism whereby anionic, phosphorylated mineral ion-binding proteins assist in specifically locating the mineral ions with respect to the mineralizing structural organic matrix. Here we extended these studies to invertebrate mineralization in Lytechinus variegatus (Lv) teeth. MATERIALS AND

methodsThe tooth proteins were extracted and the phosphoproteins occluded in the mineral were enriched by passage through a ProQ Diamond phosphoprotein enrichment column, and subjected to MS/MS analysis. A Lv RNA-seq derived transcriptome database was generated. The MS/MS data found 25 proteins previously classified as "Predicted uncharacterized proteins" and many of the spicule matrix proteins. As these 25 proteins were also identified with the transcriptome analysis, and were thus no longer "hypothetical" but real proteins in the Lv tooth. Each protein was analyzed for the presence of a signal peptide, an acidic pI≤4, and the ability to be phosphorylated.

resultsFour new Lv tooth specific Pro-Ala-rich proteins were found, representing a new class of proteins.

conclusionThe tooth is different from the spicules and other urchin skeletal elements in that only the tooth contains both "high" and "very high" magnesium calcite, [Ca(1-X) Mg(X) CO3], where X is the mole fraction of Mg. We speculate that our newly discovered proline-alanine rich proteins, also containing sequences of acidic amino acids, may be involved in the formation of high magnesium and very high magnesium calcite.

Indexed as

AnimalsBiomineralizationLytechinusProteomeToothTranscriptomeProteomebiomineralization-related proteinsMg CalcitesMS/MSRNAseqSea Urchin teeth

Identifiers

PMID29745816
PMCPMC6052879
OpenAlexW2802174841

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.