Evidence map›Paper›PMID 29744852›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2018

Experimental and Computational Protocols for Studies of Cross-Seeding Amyloid Assemblies.

Baiping Ren, Rundong Hu, Mingzhen Zhang, Yonglan Liu, Lijian Xu, Binbo Jiang, Jie Ma, Buyong Ma, Ruth Nussinov, Jie Zheng

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Baiping RenDepartment of Chemical & Biomolecular Engineering, The University of Akron, Akron, OH, USA.
Rundong HuDepartment of Chemical & Biomolecular Engineering, The University of Akron, Akron, OH, USA.
Mingzhen ZhangDepartment of Chemical & Biomolecular Engineering, The University of Akron, Akron, OH, USA.
Yonglan LiuDepartment of Chemical & Biomolecular Engineering, The University of Akron, Akron, OH, USA.
Lijian XuDepartment of Chemical & Biomolecular Engineering, The University of Akron, Akron, OH, USA.
Binbo JiangDepartment of Chemical & Biomolecular Engineering, The University of Akron, Akron, OH, USA.
Jie MaDepartment of Chemical & Biomolecular Engineering, The University of Akron, Akron, OH, USA.
Buyong MaBasic Science Program, Leidos Biomedical Research, Inc., Cancer and Inflammation Program, National Cancer Institute, Frederick, MD, USA.
Ruth NussinovBasic Science Program, Leidos Biomedical Research, Inc., Cancer and Inflammation Program, National Cancer Institute, Frederick, MD, USA. nussinor@helix.nih.gov.
Jie ZhengDepartment of Chemical & Biomolecular Engineering, The University of Akron, Akron, OH, USA. zhengj@uakron.edu.

Funding

Protein Structure, Stability, and Amyloid FormationZIABC010440 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI NUSSINOV, RUTH · 2009 to 2025
$11.8M
Method Development: Efficient Computer Vision Based AlgorithmsZIABC010442 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI NUSSINOV, RUTH · 2009 to 2025
$2.4M
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001E
6 · The paper itself

Abstract

Alzheimer's disease (AD) and type 2 diabetes (T2D) are two common protein aggregation diseases. Compelling evidence has shown a link between AD and T2D, which may derive from interspecies cross-sequence interactions between amyloid-β peptide (Aβ), associated with AD, and human islet amyloid polypeptide (hIAPP), associated with T2D. Herein, we present experimental and computational protocols and tools to study the aggregate structures and kinetics, conformational conversion, and molecular interactions of Aβ-hIAPP mixtures. These protocols could be generally applied to other cross-seeding behaviors of amyloid peptides.

Indexed as

AmyloidAmyloid beta-PeptidesHumansMicroscopyModels, MolecularMolecular Dynamics SimulationMonte Carlo MethodProtein MultimerizationSpectrum AnalysisAmyloidAmyloid beta-PeptidesAlzheimer diseaseAmyloid peptidesAβCross-seedingDiabeteshIAPP

Identifiers

PMID29744852
PMCPMC6456059

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.