Evidence map›Paper›PMID 29744712›Full record

ArticleVirus genes2018

Next-generation sequencing library preparation method for identification of RNA viruses on the Ion Torrent Sequencing Platform.

Guiqian Chen, Yuan Qiu, Qingye Zhuang, Suchun Wang, Tong Wang, Jiming Chen, Kaicheng Wang

Abstract read
In one paragraph

Article in Virus genes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. A rabies-related lyssavirus from aMicrobiology resource announcements · 2023
    Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Guiqian ChenChina Animal Health and Epidemiology Center, Qingdao, Shandong, China.
Yuan QiuChina Animal Health and Epidemiology Center, Qingdao, Shandong, China.
Qingye ZhuangChina Animal Health and Epidemiology Center, Qingdao, Shandong, China.
Suchun WangChina Animal Health and Epidemiology Center, Qingdao, Shandong, China.
Tong WangChina Animal Health and Epidemiology Center, Qingdao, Shandong, China.
Jiming ChenChina Animal Health and Epidemiology Center, Qingdao, Shandong, China.
Kaicheng WangChina Animal Health and Epidemiology Center, Qingdao, Shandong, China. wangkaicheng@cahec.cn.

Funding

China Animal Health and Epidemiology Center Innovation Fund 2015IF-0004FFNational Key Research and Development Program of China 2017YFC120050
6 · The paper itself

Abstract

Next generation sequencing (NGS) is a powerful tool for the characterization, discovery, and molecular identification of RNA viruses. There were multiple NGS library preparation methods published for strand-specific RNA-seq, but some methods are not suitable for identifying and characterizing RNA viruses. In this study, we report a NGS library preparation method to identify RNA viruses using the Ion Torrent PGM platform. The NGS sequencing adapters were directly inserted into the sequencing library through reverse transcription and polymerase chain reaction, without fragmentation and ligation of nucleic acids. The results show that this method is simple to perform, able to identify multiple species of RNA viruses in clinical samples.

Indexed as

Gene LibraryAnimalsChinaCloacaFecesHigh-Throughput Nucleotide SequencingPoultryReverse Transcriptase Polymerase Chain ReactionRNA, ViralRNA VirusesTracheaRNA, ViralLibrary preparationNext-generation sequencingRNA virus

Identifiers

PMID29744712
PMCPMC7088580

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.