Evidence map›Paper›PMID 29743242›Full record

ArticleThe Journal of biological chemistry2018

Cyclin-dependent kinase 7 (CDK7)-mediated phosphorylation of the CDK9 activation loop promotes P-TEFb assembly with Tat and proviral HIV reactivation.

Uri Mbonye, Benlian Wang, Giridharan Gokulrangan, Wuxian Shi, Sichun Yang, Jonathan Karn

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Uri MbonyeFrom the Department of Molecular Biology and Microbiology and.
Benlian Wangthe Center for Proteomics and Bioinformatics and Department of Nutrition, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106.
Giridharan Gokulranganthe Center for Proteomics and Bioinformatics and Department of Nutrition, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106.
Wuxian Shithe Center for Proteomics and Bioinformatics and Department of Nutrition, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106.
Sichun Yangthe Center for Proteomics and Bioinformatics and Department of Nutrition, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106.ORCID 0000-0002-1726-0576
Jonathan KarnFrom the Department of Molecular Biology and Microbiology and jonathan.karn@case.edu.

Funding

WG3: HIV, Co-infections and Co-morbiditiesP30AI036219 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI Sharon L. Hillier, JONATHAN KARN · 1994 to 2026
$50.0M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Identification and eliminationof HIV reservoirs in oral lymphoid tissues by engineered NK cells.R01DE025464 · NIDCR · CASE WESTERN RESERVE UNIVERSITY · PI KARN, JONATHAN · 2015 to 2019
$3.8M
Reversal of HIV latency by METH and InflammationR01DA043159 · NIDA · CASE WESTERN RESERVE UNIVERSITY · PI KARN, JONATHAN · 2016 to 2020
$3.7M
Drugs of abuse and the epigenetic and signaling pathways controlling HIV latencyR01DA036171 · NIDA · CASE WESTERN RESERVE UNIVERSITY · PI GOLDSTEIN, HARRIS, HARVEY, BRANDON K · 2013 to 2017
$3.6M
Multifaceted Modeling of Estrogen ReceptorR01GM114056 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI YANG, SICHUN · 2015 to 2024
$3.3M
HIV eradication by ADCC-activated NK cell killingR33AI110156 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI KARN, JONATHAN · 2016 to 2018
$1.4M
Role of non-coding RNA in establishing and maintaining HIV latencyR01AI120204 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI KARN, JONATHAN · 2015 to 2017
$594k
NIAID NIH HHS P30 AI036219NIAID NIH HHS R01 AI120204NIAID NIH HHS R33 AI110156NIBIB NIH HHS P30 EB009998NIDA NIH HHS R01 DA036171NIDA NIH HHS R01 DA043159NIDCR NIH HHS R01 DE025464NIGMS NIH HHS R01 GM114056
6 · The paper itself

Abstract

The HIV trans-activator Tat recruits the host transcription elongation factor P-TEFb to stimulate proviral transcription. Phosphorylation of Thr-186 on the activation loop (T-loop) of cyclin-dependent kinase 9 (CDK9) is essential for its kinase activity and assembly of CDK9 and cyclin T1 (CycT1) to form functional P-TEFb. Phosphorylation of a second highly conserved T-loop site, Ser-175, alters the competitive binding of Tat and the host recruitment factor bromodomain containing 4 (BRD4) to P-TEFb. Here, we investigated the intracellular mechanisms that regulate these key phosphorylation events required for HIV transcription. Molecular dynamics simulations revealed that the CDK9/CycT1 interface is stabilized by intramolecular hydrogen bonding of pThr-186 by an arginine triad and Glu-96 of CycT1. Arginine triad substitutions that disrupted CDK9/CycT1 assembly accumulated Thr-186-dephosphorylated CDK9 associated with the cytoplasmic Hsp90/Cdc37 chaperone. The Hsp90/Cdc37/CDK9 complex was also present in resting T cells, which lack CycT1. Hsp90 inhibition in primary T cells blocked P-TEFb assembly, disrupted Thr-186 phosphorylation, and suppressed proviral reactivation. The selective CDK7 inhibitor THZ1 blocked CDK9 phosphorylation at Ser-175, and

Indexed as

Virus ActivationCyclin-Dependent Kinase 9Enzyme ActivationHIV-1HSP90 Heat-Shock ProteinsHumansJurkat CellsPhosphorylationPositive Transcriptional Elongation Factor BProtein BindingSerinetat Gene Products, Human Immunodeficiency VirusThreonineCDK9 protein, humanCyclin-Dependent Kinase 9HSP90 Heat-Shock ProteinsPositive Transcriptional Elongation Factor BSerinetat Gene Products, Human Immunodeficiency VirusThreonine7SK snRNPbromodomain-containing protein 4 (BRD4)Cdc37CDK activation loopheat-shock protein 90 (Hsp90)HIV latencyhuman immunodeficiency virus (HIV)post-translational modification (PTM)proteomicsP-TEFbsuper-elongation complexTattranscription elongation factor

Identifiers

PMID29743242
PMCPMC6028954

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.