Evidence map›Paper›PMID 29743155›Full record

ArticleJMIR public health and surveillance2018

Causality Patterns for Detecting Adverse Drug Reactions From Social Media: Text Mining Approach.

Danushka Bollegala, Simon Maskell, Richard Sloane, Joanna Hajne, Munir Pirmohamed

Abstract read
In one paragraph

Article in JMIR public health and surveillance, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Danushka BollegalaDepartment of Computer Science, University of Liverpool, Liverpool, United Kingdom.ORCID http://orcid.org/0000-0003-4476-7003
Simon Maskell *Department of Computer Science, University of Liverpool, Liverpool, United Kingdom.ORCID http://orcid.org/0000-0003-1917-2913
Richard SloaneDepartment of Computer Science, University of Liverpool, Liverpool, United Kingdom.ORCID http://orcid.org/0000-0001-5584-2844
Joanna HajneDepartment of Computer Science, University of Liverpool, Liverpool, United Kingdom.ORCID http://orcid.org/0000-0002-0462-860X
Munir Pirmohamed *Department of Translational Medicine, University of Liverpool, Liverpool, United Kingdom.ORCID http://orcid.org/0000-0002-7534-7266

Funding

Medical Research Council MR/L006758/1
6 · The paper itself

Abstract

backgroundDetecting adverse drug reactions (ADRs) is an important task that has direct implications for the use of that drug. If we can detect previously unknown ADRs as quickly as possible, then this information can be provided to the regulators, pharmaceutical companies, and health care organizations, thereby potentially reducing drug-related morbidity and saving lives of many patients. A promising approach for detecting ADRs is to use social media platforms such as Twitter and Facebook. A high level of correlation between a drug name and an event may be an indication of a potential adverse reaction associated with that drug. Although numerous association measures have been proposed by the signal detection community for identifying ADRs, these measures are limited in that they detect correlations but often ignore causality.

objectiveThis study aimed to propose a causality measure that can detect an adverse reaction that is caused by a drug rather than merely being a correlated signal.

methodsTo the best of our knowledge, this was the first causality-sensitive approach for detecting ADRs from social media. Specifically, the relationship between a drug and an event was represented using a set of automatically extracted lexical patterns. We then learned the weights for the extracted lexical patterns that indicate their reliability for expressing an adverse reaction of a given drug.

resultsOur proposed method obtains an ADR detection accuracy of 74% on a large-scale manually annotated dataset of tweets, covering a standard set of drugs and adverse reactions.

conclusionsBy using lexical patterns, we can accurately detect the causality between drugs and adverse reaction-related events.

Indexed as

ADR detectioncausalitycausality detectionlexical patternsmachine learningsupport vector machines

Identifiers

PMID29743155
PMCPMC5966656

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.